- INPUT
It contains R scripts for analyse the input dataset (gene and exon datasets). It is used for performing descriptive statistics (median, count…), and calculate a standard measure of dispersion of our data (calculate ranges).
- PROCESSING
Prepare the input data for DFE-alpha (includes twoperl and a bash script for concatening the coding regions according to the empirical distribution of the features of interest) and a bash script for running the program.
- ANALYSIS
Estimate KZ+, KZ-/0 and KS from the DFE-alpha output and statistic analysis with R. It includes a perl script for transform the DFE-output and calculate these values. The statistic analysis is performed with R scripts.
- GRAPHS
Matrix correlation graphs and other stuff. It includes some png examples.