Skip to content

Latest commit

 

History

History
20 lines (12 loc) · 902 Bytes

README.md

File metadata and controls

20 lines (12 loc) · 902 Bytes

Master's thesis

Scripts

  • INPUT

It contains R scripts for analyse the input dataset (gene and exon datasets). It is used for performing descriptive statistics (median, count…), and calculate a standard measure of dispersion of our data (calculate ranges).

  • PROCESSING

Prepare the input data for DFE-alpha (includes twoperl and a bash script for concatening the coding regions according to the empirical distribution of the features of interest) and a bash script for running the program.

  • ANALYSIS

Estimate KZ+, KZ-/0 and KS from the DFE-alpha output and statistic analysis with R. It includes a perl script for transform the DFE-output and calculate these values. The statistic analysis is performed with R scripts.

  • GRAPHS

Matrix correlation graphs and other stuff. It includes some png examples.