What's Changed
New features
- Reporting of samples excluded or included in signature calculation and column added to sample features
- Allow users to specify required number of segments to compute signatures (caution is recommended before changing this expert parameter)
Major changes
- Fixed a bug where calculateFeatures() was incorrectly including normal/diploid segments when using only a single core. Results from versions < v1.2.0 will differ when run on the same sample sets where a single core or default values were used. The impact on interpretability of the signatures is minimal but recomputing the signatures is recommended.
- Added error catching for low segment count samples where no samples have sufficient samples
- Fixed bug resulting in class initialisation date being fixed at install time not run time
- Fixed a bug causing errors due to specific combination of samples and components during internal matrix dimension checks
- Depreciated clinPredictionDenovo() as it was not fit for purpose. Code still exists but is non-functional.
Minor changes
- Implementation of various unit tests
- Example CNQuant and SigQuant objects
- Refactored class comparators to be more robust
- Various code refactors
- Updated description to remove redundant imports
Full Changelog: v1.1.2...v1.2.0
Contributors
Phil9S