version 1.2.0

What's Changed

• v1.2.0 development PR by @Phil9S in #20

New features

• Reporting of samples excluded or included in signature calculation and column added to sample features
• Allow users to specify required number of segments to compute signatures (caution is recommended before changing this expert parameter)

Major changes

• Fixed a bug where calculateFeatures() was incorrectly including normal/diploid segments when using only a single core. Results from versions < v1.2.0 will differ when run on the same sample sets where a single core or default values were used. The impact on interpretability of the signatures is minimal but recomputing the signatures is recommended.
• Added error catching for low segment count samples where no samples have sufficient samples
• Fixed bug resulting in class initialisation date being fixed at install time not run time
• Fixed a bug causing errors due to specific combination of samples and components during internal matrix dimension checks
• Depreciated clinPredictionDenovo() as it was not fit for purpose. Code still exists but is non-functional.

Minor changes

• Implementation of various unit tests
• Example CNQuant and SigQuant objects
• Refactored class comparators to be more robust
• Various code refactors
• Updated description to remove redundant imports

Full Changelog: v1.1.2...v1.2.0

v1.1.2

What's Changed

• Fixed a minor bug in profiles with zero counts for the osCN feature in #18

Full Changelog: v1.1.1...v1.1.2

version 1.1.1

What's Changed

• checkChromosomeFormat-fix by @Phil9S in #16

Full Changelog: v1.1.0...v1.1.1

version 1.1.0

What's Changed

• Support build hg38 for the extraction of copy number features in #2
• Test r version support in #4
• genome build check in #5
• Bug sample n requirments in #9
• fix bpchrarm NA in #11
• pull request - feature updates v1.1.0 in #13

Full Changelog: v1.0.0...v1.1.0

Publication release

v1.0.0

Clean repo initial commit