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Add functionality for hippunfold-singlesubject #388

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mackenziesnyder
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  • WIP still because I have not been able to test this end-to-end due to constraints with cbs basic
  • command to run on a single subject non-bids structured file:
    hippunfold-singlesubject --input /path/to/input.nii.gz --output /path/to/my/output_folder --subject 001 --modality T1w
  • add: --use-singularity or --use-conda
  • optional, add: --temp-dir /path/to/tempdir

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@akhanf akhanf Mar 12, 2025

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Nice! I think you could move this script to be next to the run.py --
I also think we could rename it something pithier --
hippunfold-quick
hippunfold-ez
hippunfold-easy
hippunfold-now

thoughts?

the script could be called run_<suffix>.py

@mackenziesnyder mackenziesnyder changed the title WIP - Add functionality for hippunfold-singlesubject Add functionality for hippunfold-singlesubject Mar 17, 2025
@jordandekraker jordandekraker merged commit d734965 into khanlab:dev-v2.0.0 Mar 18, 2025
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3 participants