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@khanlab

Khan Computational Imaging Lab

  • 13 followers
  • Robarts Research Institute, Western University, London, Canada

Popular repositories Loading

  1. hippunfold hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    Python 54 15

  2. snakebids snakebids Public

    Snakemake + BIDS

    Python 17 14

  3. tar2bids tar2bids Public

    Python 7 9

  4. neuroglia-helpers neuroglia-helpers Public

    Helper and wrapper scripts for using Singularity locally and on compute canada

    Shell 5 7

  5. autobids autobids Public archive

    Automated Dicom to BIDS and pipelines using compute canada

    Shell 5 4

  6. bids-tutorial bids-tutorial Public

    Tutorial on BIDS - Methods Lunch Feb 12

    5

Repositories

Showing 10 of 114 repositories
  • SPIMquant Public

    SnakeBIDS app for quantitative analysis of SPIM (lightsheet) brain data

    khanlab/SPIMquant’s past year of commit activity
    Jupyter Notebook 1 0 1 2 Updated Feb 2, 2025
  • snakebids Public

    Snakemake + BIDS

    khanlab/snakebids’s past year of commit activity
    Python 17 MIT 14 21 5 Updated Feb 1, 2025
  • khanlab.github.io Public

    Khan Lab website

    khanlab/khanlab.github.io’s past year of commit activity
    HTML 2 10 1 2 Updated Feb 1, 2025
  • gcnn_dmri Public
    khanlab/gcnn_dmri’s past year of commit activity
    Python 1 MIT 0 0 1 Updated Feb 1, 2025
  • hippunfold Public

    BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

    khanlab/hippunfold’s past year of commit activity
    Python 54 MIT 15 21 (1 issue needs help) 6 Updated Jan 31, 2025
  • zarrnii Public

    Package for working with OME-Zarr and NIFTI images in a unified manner, with a focus on spatial transformations

    khanlab/zarrnii’s past year of commit activity
    Jupyter Notebook 2 1 1 0 Updated Jan 31, 2025
  • SPIMprep Public

    A Snakemake workflow for pre-processing single plane illumination microscopy (SPIM, aka lightsheet microscopy)

    khanlab/SPIMprep’s past year of commit activity
    Python 3 MIT 1 9 (4 issues need help) 3 Updated Jan 30, 2025
  • SPIMprep-deps Public
    khanlab/SPIMprep-deps’s past year of commit activity
    Shell 0 0 0 0 Updated Jan 30, 2025
  • hippunfold_deps Public

    Dependencies container for hippocampal_autotop (niftynet, minified fsl/ants, c3d, mcr)

    khanlab/hippunfold_deps’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Jan 11, 2025
  • wiki Public
    khanlab/wiki’s past year of commit activity
    Ruby 0 MIT 2 2 1 Updated Jan 6, 2025
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Most used topics

bids mri python