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Add jupyter/julia-notebook (jupyter#1926)
* Add jupyter/julia-notebook There is a growing number of Julia users in the Jupyter ecosystem who do not use R, and hence would <3 to have a dedicated docker image that doesn't bring in all the R stuff that datascience-notebook brings in! The built image size is much smaller, and eventually paves the way to better ecosystem support for Julia. * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Add a test for julia-notebook * Tell tests what julia-notebook inherits from * Sort lists with julia-notebook * Fix README for julia-notebook * Add julia-notebook to the makefile * Move julia-notebook below r-notebook * Use hard tabs in Makefile * Do some more sorting * Rename test_julia to avoid mypy issue * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Re-order julia/r-notebook Co-authored-by: Ayaz Salikhov <mathbunnyru@users.noreply.github.com> * Move julia-notebook stanza under r-notebook * Update inheritance diagram --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Ayaz Salikhov <mathbunnyru@users.noreply.github.com>
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| # Documentation | ||
| README.md |
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| # Copyright (c) Jupyter Development Team. | ||
| # Distributed under the terms of the Modified BSD License. | ||
| ARG OWNER=jupyter | ||
| ARG BASE_CONTAINER=$OWNER/minimal-notebook | ||
| FROM $BASE_CONTAINER | ||
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| LABEL maintainer="Jupyter Project <jupyter@googlegroups.com>" | ||
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| # Fix: https://github.com/hadolint/hadolint/wiki/DL4006 | ||
| # Fix: https://github.com/koalaman/shellcheck/wiki/SC3014 | ||
| SHELL ["/bin/bash", "-o", "pipefail", "-c"] | ||
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| USER root | ||
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| # Julia installation | ||
| # Default values can be overridden at build time | ||
| # (ARGS are in lower case to distinguish them from ENV) | ||
| # Check https://julialang.org/downloads/ | ||
| ARG julia_version="1.9.1" | ||
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| # Julia dependencies | ||
| # install Julia packages in /opt/julia instead of ${HOME} | ||
| ENV JULIA_DEPOT_PATH=/opt/julia \ | ||
| JULIA_PKGDIR=/opt/julia \ | ||
| JULIA_VERSION="${julia_version}" | ||
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| WORKDIR /tmp | ||
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| # hadolint ignore=SC2046 | ||
| RUN set -x && \ | ||
| julia_arch=$(uname -m) && \ | ||
| julia_short_arch="${julia_arch}" && \ | ||
| if [ "${julia_short_arch}" == "x86_64" ]; then \ | ||
| julia_short_arch="x64"; \ | ||
| fi; \ | ||
| julia_installer="julia-${JULIA_VERSION}-linux-${julia_arch}.tar.gz" && \ | ||
| julia_major_minor=$(echo "${JULIA_VERSION}" | cut -d. -f 1,2) && \ | ||
| mkdir "/opt/julia-${JULIA_VERSION}" && \ | ||
| wget --progress=dot:giga "https://julialang-s3.julialang.org/bin/linux/${julia_short_arch}/${julia_major_minor}/${julia_installer}" && \ | ||
| tar xzf "${julia_installer}" -C "/opt/julia-${JULIA_VERSION}" --strip-components=1 && \ | ||
| rm "${julia_installer}" && \ | ||
| ln -fs /opt/julia-*/bin/julia /usr/local/bin/julia | ||
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| # Show Julia where conda libraries are \ | ||
| RUN mkdir /etc/julia && \ | ||
| echo "push!(Libdl.DL_LOAD_PATH, \"${CONDA_DIR}/lib\")" >> /etc/julia/juliarc.jl && \ | ||
| # Create JULIA_PKGDIR \ | ||
| mkdir "${JULIA_PKGDIR}" && \ | ||
| chown "${NB_USER}" "${JULIA_PKGDIR}" && \ | ||
| fix-permissions "${JULIA_PKGDIR}" | ||
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| USER ${NB_UID} | ||
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| # Add Julia packages. | ||
| # Install IJulia as jovyan and then move the kernelspec out | ||
| # to the system share location. Avoids problems with runtime UID change not | ||
| # taking effect properly on the .local folder in the jovyan home dir. | ||
| RUN julia -e 'import Pkg; Pkg.update()' && \ | ||
| julia -e 'import Pkg; Pkg.add("HDF5")' && \ | ||
| julia -e 'using Pkg; pkg"add IJulia"; pkg"precompile"' && \ | ||
| # move kernelspec out of home \ | ||
| mv "${HOME}/.local/share/jupyter/kernels/julia"* "${CONDA_DIR}/share/jupyter/kernels/" && \ | ||
| chmod -R go+rx "${CONDA_DIR}/share/jupyter" && \ | ||
| rm -rf "${HOME}/.local" && \ | ||
| fix-permissions "${JULIA_PKGDIR}" "${CONDA_DIR}/share/jupyter" | ||
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| WORKDIR "${HOME}" |
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| # Jupyter Notebook Julia Stack | ||
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| [](https://hub.docker.com/r/jupyter/julia-notebook/) | ||
| [](https://hub.docker.com/r/jupyter/julia-notebook/) | ||
| [](https://hub.docker.com/r/jupyter/julia-notebook/ "jupyter/julia-notebook image size") | ||
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| GitHub Actions in the <https://github.com/jupyter/docker-stacks> project builds and pushes this image to Docker Hub. | ||
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| Please visit the project documentation site for help to use and contribute to this image and others. | ||
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| - [Jupyter Docker Stacks on ReadTheDocs](https://jupyter-docker-stacks.readthedocs.io/en/latest/index.html) | ||
| - [Selecting an Image :: Core Stacks :: jupyter/julia-notebook](https://jupyter-docker-stacks.readthedocs.io/en/latest/using/selecting.html#jupyter-julia-notebook) |
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| # Copyright (c) Jupyter Development Team. | ||
| # Distributed under the terms of the Modified BSD License. | ||
| import logging | ||
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| from tests.conftest import TrackedContainer | ||
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| LOGGER = logging.getLogger(__name__) | ||
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| def test_julia(container: TrackedContainer) -> None: | ||
| """Basic julia test""" | ||
| LOGGER.info("Test that julia is correctly installed ...") | ||
| logs = container.run_and_wait( | ||
| timeout=5, | ||
| tty=True, | ||
| command=["start.sh", "bash", "-c", "julia --version"], | ||
| ) | ||
| LOGGER.debug(logs) |