autoformatting with ruff and isort

kedhammar · Nov 30, 2023 · 97227fa · 97227fa
1 parent c84bbd7
commit 97227fa
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Showing 62 changed files with 5,486 additions and 3,194 deletions.
diff --git a/data/Chromium_10X_indexes.py b/data/Chromium_10X_indexes.py
@@ -692,5 +692,5 @@
     "SI-TS-H9": ["CCTCCGTGTC", "TACCTGGAAC"],
     "SI-TS-H10": ["TGTGAATTTC", "CACGTGGTTC"],
     "SI-TS-H11": ["ACACCAGCCT", "ACGAACCAGC"],
-    "SI-TS-H12": ["GACAGGCGGT", "CTAAGTCCAG"]
+    "SI-TS-H12": ["GACAGGCGGT", "CTAAGTCCAG"],
 }
diff --git a/epp_utils/formula.py b/epp_utils/formula.py
@@ -36,4 +36,4 @@ def nM_to_ng_ul(nM, bp):
 for col in range(1, 13):
     for row in "ABCDEFGH":
         well_name2num_96plate[f"{row}:{col}"] = i
-        i += 1
+        i += 1
diff --git a/epp_utils/udf_tools.py b/epp_utils/udf_tools.py
@@ -1,7 +1,7 @@
-from requests.exceptions import HTTPError
-from genologics.entities import Artifact, Process
 import json
 
+from genologics.entities import Artifact, Process
+from requests.exceptions import HTTPError
 
 DESC = """This is a submodule for defining reuasble functions to handle artifact
 UDFs in in the Genonolics Clarity LIMS API.
@@ -19,7 +19,7 @@ def put(art: Artifact, target_udf: str, val, on_fail=AssertionError()):
         art.put()
         return True
 
-    except HTTPError as e:
+    except HTTPError:
         del art.udf[target_udf]
         if issubclass(type(on_fail), BaseException):
             raise on_fail

diff --git a/scilifelab_epps/__init__.py b/scilifelab_epps/__init__.py
@@ -1,4 +1,4 @@
 """ LIMS EPP scripts, NGI in Stockholm
 """
 
-__version__ = '1.0.0'
+__version__ = "1.0.0"