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Fred Hutch
- Bozeman, MT
- jaredgalloway.org
- @GallowayJared
Highlights
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ncov-dms-model Public
A modified ncov nextrain build to include dms model predictions'
Python MIT License UpdatedFeb 3, 2023 -
autodiff-experiments Public
Forked from 4ment/gradient-benchmarkautomatic/analytical differentiation benchmark
HTML UpdatedOct 26, 2022 -
dotfiles Public
Forked from victoriadrake/dotfilesDotfiles and automagic set-up scripts for Linux flavours
Shell UpdatedAug 1, 2022 -
partis Public
Forked from psathyrella/partisB- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
Python GNU General Public License v3.0 UpdatedJan 13, 2022 -
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BGMP-Internship-Reports Public
A place for my three internship reports to live.
TeX UpdatedDec 1, 2020 -
Nextflow-Example Public
A small example of how to start building a nextflow pipeline.
Nextflow UpdatedOct 20, 2020 -
olmsted Public
Forked from matsengrp/olmstedB-cell repertoire and clonal family tree explorer
JavaScript GNU Affero General Public License v3.0 UpdatedJul 11, 2020 -
spring_term_paper_bgmp Public
The source files for a spring 2020 BGMP term paper focused on phip-seq analysis pipeline
HTML UpdatedJun 22, 2020 -
TreeSequencePrimer Public
This repository will hold a notebook which will walk through and explain some tskit `TreeSequence` basics
Jupyter Notebook UpdatedMay 28, 2020 -
HabitatCorrectedNetwork Public
Forked from vbrisson/HabitatCorrectedNetworka python module for calculating microbial correlation matrices that account for habitat filtering effects
Python MIT License UpdatedApr 12, 2020 -
motif-mark Public
A simple CLI to draw motif plots given a fasta and motif file.
Python UpdatedMar 11, 2020 -
Falcon_Crab_Assemblathon Public
This repository will contain the necessary scripts and computational benchmarks for the assembly of the King Crab.
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Spot-Detection Public
Contains code to simualte spots on background noise, and the convolutional neural network framework to train on those images.
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ReLERNN Public
Forked from kr-colab/ReLERNNRecombination Landscape Estimation using Recurrent Neural Networks
Python MIT License UpdatedJan 20, 2020 -
manuscript Public
Forked from popsim-consortium/manuscriptPopSim consortium manuscript
TeX UpdatedDec 22, 2019 -
stdpopsim Public
Forked from popsim-consortium/stdpopsimA library of standard simulation models for msprime
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analysis Public
Forked from popsim-consortium/analysisAnalysis of inference methods on standard population models using Snakemake
Python MIT License UpdatedDec 21, 2019 -
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Neuron-Image-Analysis Public
This repository will hold code and other documents for doing image analysis (deep learning) to identify specific neurons.
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tsencode Public
This is the starting code for endcoding an msprime TreeSequence Object into a 3D array for ML and visualization purposes
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demultiplexing-jgallowa07 Public
Forked from 2019-bgmp/demultiplexing-jgallowa07demultiplexing-jgallowa07 created by GitHub Classroom
Python UpdatedNov 5, 2019 -
IDP-template Public template
Forked from eharkins/IDP-templateindividual career development plan
UpdatedSep 14, 2019 -
msprime Public
Forked from tskit-dev/msprimeA reimplementation of Hudson's classical ms simulator for modern data sets.
C GNU General Public License v3.0 UpdatedMay 20, 2019