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add gee prototype module with example #664

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merged 14 commits into from
Nov 30, 2022
Merged

add gee prototype module with example #664

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08aa1e3
add gee prototype module with example
Oct 28, 2022
7fba81a
Merge branch 'main' into 2_prototype
shajoezhu Nov 9, 2022
4bea194
Merge branch 'main' into 2_prototype
shajoezhu Nov 11, 2022
fc14eff
update, to work with the latest tern.gee prototype
shajoezhu Nov 12, 2022
d7d84ac
fix version
shajoezhu Nov 12, 2022
bad038e
Update tm_a_gee (#689)
mhallal1 Nov 23, 2022
015f785
679 Add tests for `tm_a_gee` (#690)
edelarua Nov 24, 2022
bda4285
681 Add titles/footnotes for `tm_a_gee` (#691)
edelarua Nov 30, 2022
998322b
685 Update description after release tag added (#693)
edelarua Nov 30, 2022
db9bd35
fix gee coefficient display (#695)
shajoezhu Nov 30, 2022
41a62b8
Merge branch 'main' into 2_prototype
shajoezhu Nov 30, 2022
7937676
Fix lint, styler, spelling, update docs
edelarua Nov 30, 2022
92f3ebb
Update tests
edelarua Nov 30, 2022
1bf1ebf
Update NEWS
edelarua Nov 30, 2022
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3 changes: 2 additions & 1 deletion DESCRIPTION
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Expand Up @@ -56,7 +56,7 @@ Imports:
teal.reporter (>= 0.1.1),
teal.transform (>= 0.2.0),
teal.widgets (>= 0.2.0),
tern.gee,
tern.gee (>= 0.0.0.9002),
tern.mmrm (>= 0.2.1),
tidyr,
utils,
Expand All @@ -82,6 +82,7 @@ Remotes:
insightsengineering/teal.widgets@*release,
insightsengineering/teal@*release,
insightsengineering/tern.mmrm@*release,
insightsengineering/tern.gee@*release,
insightsengineering/tern@*release
Config/Needs/website: insightsengineering/nesttemplate
Encoding: UTF-8
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2 changes: 2 additions & 0 deletions NAMESPACE
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Expand Up @@ -28,6 +28,7 @@ export(split_interactions)
export(styled_expr)
export(teal_enough_rows)
export(teal_has_element)
export(tm_a_gee)
export(tm_a_mmrm)
export(tm_g_barchart_simple)
export(tm_g_ci)
Expand Down Expand Up @@ -70,3 +71,4 @@ importFrom(magrittr,"%>%")
importFrom(methods,is)
importFrom(rlang,":=")
importFrom(rlang,.data)
importFrom(tern.gee,lsmeans)
1 change: 1 addition & 0 deletions NEWS.md
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Expand Up @@ -7,6 +7,7 @@

### Enhancements
* Replaced `synthetic_cdisc_data` with refactored `synthetic_cdisc_dataset` function to speed up dataset loading in tests/examples.
* Added new GEE module `tm_a_gee`.
* Added interface for selecting an interaction term to `tm_t_ancova`.

### Miscellaneous
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1 change: 1 addition & 0 deletions R/teal.modules.clinical.R
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Expand Up @@ -25,5 +25,6 @@ if (getRversion() >= "2.15.1") {
#' Avoiding R CMD check notes
#' @importFrom methods is
#' @importFrom rlang .data
#' @importFrom tern.gee lsmeans
#' @noRd
NULL
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