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[Bug]: Python app deployment in shinyapps.io fails #68

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vedhav opened this issue Sep 1, 2023 · 1 comment
Closed
3 tasks done

[Bug]: Python app deployment in shinyapps.io fails #68

vedhav opened this issue Sep 1, 2023 · 1 comment
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@donyunardi @pawelru @cicdguy
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bug Something isn't working

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@vedhav
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vedhav commented Sep 1, 2023

What happened?

The deployment is successful when done from the local using:

rsconnect::setAccountInfo(
  name = "<ACCOUNT_NAME>",
  token = "<TOKEN>",
  secret = "<SECRET>",
  server = "shinyapps.io"
)
rsconnect::deployApp(
  appFiles = c("app.R", list.files("www", full.names = TRUE)),
  appName = rsconnect::generateAppName("python-test-local"),
  appTitle = "python-test-local",
  account = "<ACCOUNT_NAME>",
  upload = TRUE,
  logLevel = "normal",
  lint = FALSE,
  forceUpdate = TRUE
)

However, the same code is used for deploying in the GitHub deploy action which fails. The RSConnect log is mentioned below

Note: Please checkout the branch deploy-apps@main to have a look at the deploy.yaml

Relevant log output

023-09-01T09:39:14.627579+00:00 shinyapps[9695072]: Container event from container-8569187: start
2023-09-01T09:39:18.415986+00:00 shinyapps[9695072]: Running on host: ce4fd780c0c8
2023-09-01T09:39:18.422397+00:00 shinyapps[9695072]: Running as user: uid=10001(shiny) gid=10001(shiny) groups=10001(shiny)
2023-09-01T09:39:18.428650+00:00 shinyapps[9695072]: Connect version: 2023.03.0
2023-09-01T09:39:18.433746+00:00 shinyapps[9695072]: LANG: C.UTF-8
2023-09-01T09:39:18.440789+00:00 shinyapps[9695072]: Working directory: /srv/connect/apps/nest_python_stable
2023-09-01T09:39:18.445802+00:00 shinyapps[9695072]: Using R 4.3.1
2023-09-01T09:39:18.450892+00:00 shinyapps[9695072]: R.home(): /opt/R/4.3.1/lib/R
2023-09-01T09:39:18.456244+00:00 shinyapps[9695072]: Content will use current R environment
2023-09-01T09:39:18.461473+00:00 shinyapps[9695072]: R_LIBS: (unset)
2023-09-01T09:39:18.467079+00:00 shinyapps[9695072]: .libPaths(): /opt/R/4.3.1/lib/R/library
2023-09-01T09:39:18.472390+00:00 shinyapps[9695072]: shiny version: 1.7.5
2023-09-01T09:39:18.478320+00:00 shinyapps[9695072]: httpuv version: 1.6.11
2023-09-01T09:39:18.484464+00:00 shinyapps[9695072]: rmarkdown version: 2.24
2023-09-01T09:39:18.489911+00:00 shinyapps[9695072]: knitr version: 1.43
2023-09-01T09:39:18.495559+00:00 shinyapps[9695072]: jsonlite version: 1.8.7
2023-09-01T09:39:18.501324+00:00 shinyapps[9695072]: RJSONIO version: (none)
2023-09-01T09:39:18.507956+00:00 shinyapps[9695072]: htmltools version: 0.5.6
2023-09-01T09:39:18.514947+00:00 shinyapps[9695072]: reticulate version: 1.31
2023-09-01T09:39:18.522334+00:00 shinyapps[9695072]: Warning: The reticulate package is installed but no Python environment is available.
2023-09-01T09:39:18.528379+00:00 shinyapps[9695072]: Did you forget to set the RETICULATE_PYTHON environment variable in your .Rprofile before publishing?
2023-09-01T09:39:18.533508+00:00 shinyapps[9695072]: Using pandoc: /opt/connect/ext/pandoc/2.16
2023-09-01T09:39:18.538988+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.544385+00:00 shinyapps[9695072]: Starting R with process ID: '32'
2023-09-01T09:39:18.550523+00:00 shinyapps[9695072]: Shiny application starting ...
2023-09-01T09:39:18.555843+00:00 shinyapps[9695072]: Loading required package: teal.data
2023-09-01T09:39:18.561138+00:00 shinyapps[9695072]: Loading required package: teal.slice
2023-09-01T09:39:18.566331+00:00 shinyapps[9695072]: Loading required package: teal.transform
2023-09-01T09:39:18.573512+00:00 shinyapps[9695072]: Loading required package: magrittr
2023-09-01T09:39:18.579082+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.584999+00:00 shinyapps[9695072]: You are using teal version 0.14.0
2023-09-01T09:39:18.591194+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.596550+00:00 shinyapps[9695072]: Attaching package: ‘teal’
2023-09-01T09:39:18.604790+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.610002+00:00 shinyapps[9695072]: The following objects are masked from ‘package:teal.slice’:
2023-09-01T09:39:18.615671+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.620470+00:00 shinyapps[9695072]:     as.teal_slices, teal_slices
2023-09-01T09:39:18.625931+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.632573+00:00 shinyapps[9695072]: Loading required package: ggmosaic
2023-09-01T09:39:18.637611+00:00 shinyapps[9695072]: Loading required package: ggplot2
2023-09-01T09:39:18.643226+00:00 shinyapps[9695072]: Loading required package: shinyTree
2023-09-01T09:39:18.648942+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.655212+00:00 shinyapps[9695072]: Attaching package: ‘colourpicker’
2023-09-01T09:39:18.660662+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.665910+00:00 shinyapps[9695072]: The following object is masked from ‘package:shiny’:
2023-09-01T09:39:18.671105+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.676338+00:00 shinyapps[9695072]:     runExample
2023-09-01T09:39:18.681435+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.686319+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.691648+00:00 shinyapps[9695072]: Attaching package: ‘ggExtra’
2023-09-01T09:39:18.696985+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.702120+00:00 shinyapps[9695072]: The following object is masked from ‘package:colourpicker’:
2023-09-01T09:39:18.707228+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.712303+00:00 shinyapps[9695072]:     runExample
2023-09-01T09:39:18.717381+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.723015+00:00 shinyapps[9695072]: The following object is masked from ‘package:shiny’:
2023-09-01T09:39:18.728149+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.733273+00:00 shinyapps[9695072]:     runExample
2023-09-01T09:39:18.738473+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.743968+00:00 shinyapps[9695072]: Loading required package: ggpp
2023-09-01T09:39:18.749191+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.755376+00:00 shinyapps[9695072]: Attaching package: ‘ggpp’
2023-09-01T09:39:18.761381+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.766686+00:00 shinyapps[9695072]: The following object is masked from ‘package:ggplot2’:
2023-09-01T09:39:18.774775+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.780148+00:00 shinyapps[9695072]:     annotate
2023-09-01T09:39:18.785409+00:00 shinyapps[9695072]: 
2023-09-01T09:39:18.790574+00:00 shinyapps[9695072]: Registered S3 method overwritten by 'ggpmisc':
2023-09-01T09:39:18.795779+00:00 shinyapps[9695072]:   method                  from   
2023-09-01T09:39:18.800695+00:00 shinyapps[9695072]:   as.character.polynomial polynom
2023-09-01T09:39:18.805899+00:00 shinyapps[9695072]: Error in stop_no_virtualenv_starter() : 
2023-09-01T09:39:18.810815+00:00 shinyapps[9695072]:   Suitable Python installation for creating a venv not found.
2023-09-01T09:39:18.816777+00:00 shinyapps[9695072]: Please install Python with one of following methods:
2023-09-01T09:39:18.821638+00:00 shinyapps[9695072]: - https://github.com/rstudio/python-builds/
2023-09-01T09:39:18.826666+00:00 shinyapps[9695072]: - reticulate::install_python(version = '<version>')
2023-09-01T09:39:18.842294+00:00 shinyapps[9695072]: Calls: local ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous>
2023-09-01T09:39:18.847677+00:00 shinyapps[9695072]: Execution halted

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@vedhav vedhav added the bug Something isn't working label Sep 1, 2023
@vedhav vedhav mentioned this issue Sep 1, 2023
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@donyunardi
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Error in stop_no_virtualenv_starter() :

@cicdguy @walkowif
Is this something that you could help out? Maybe something to do with setting up the virtuanenv in the environment/pipeline?

@vedhav vedhav mentioned this issue Sep 26, 2023
Merged
vedhav added a commit that referenced this issue Sep 26, 2023
@vedhav
Fix false-positive deployment status (#73)
c4d9c8d 
Closes #69 #68 and #67 

And remove unused assets from the demo apps as we've moved to a remote
logo path

The fix for the cypress tests to work (#67) was to move the JS
dependency lock files inside the `tests` directory instead of the
dedicated `js` directory as it was before.

The deployment failure issues (#68) were caused by a new dependency
added to some package in the `renv.lock` file and once we update the
renv.lock file with the new package dependency it started to work fine.
@vedhav vedhav closed this as completed Sep 26, 2023
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