compute phasing from trios #30
Comments
|
There isn't currently demand for this. |
cseed
added a commit
to cseed/hail
that referenced
this issue
Sep 22, 2018
* add hail-ci-build.sh wip * wip * make hail-ci script work added shutdown endpoint * fix
danking
pushed a commit
that referenced
this issue
Sep 25, 2018
* initial revision * wip * added deployment updated logging * added service * wip * wip * cancellation, primitive client library (unused) bidict jupyter deployment * batches, higher level api * fixed readme * minor * added tests, reorg * tests run in itself * wip added attributes removed job names create batch objects added callback (untested) * added callbacks, callback test * makefile changes * wip try to get callback test working on k8s cluster * tweaks * callback test works on k8s * starting to play with containerized spark some cleanup * Create setup.py * move setup.py to correct location * ignore compiled pyc files * describe how to use minikube with local docker images * add special note about `imagePullPolicy` * add an environment yaml * add a getting started section * add a dockerignore file * do not fail if callback fails * expose pod/container volumes * fix volumeMounts field name * add resources * add tolerations * add jobs listing * add jobs test * fix the environment * update Batch.create_job for all the new parameters * fix missing id * avoid crashing on bad event types * update dockerignore * retry event loops * Update server.py * fix dockerignore * fix dockerignore * stash the attributes sent by api * cache the status * fixed tests (#28) * Pr builder image (#27) * added pr-builder image logic * added missing files * address comments * add hail-ci-build.sh (#30) * add hail-ci-build.sh wip * wip * make hail-ci script work added shutdown endpoint * fix * don't log the (pod) log (#29) * added bash to pr-builder image (#32) * Add git (#35) * test * added git to pr-builder image * add python alias in pr-builder image * added curl to pr-builder image * Job delete (#36) * wip: added job/delete need to test * added delete, various * tag executable images (#38) * update deployment (#39) * make batch single threaded (#40) * make batch single threaded polling and k8s watch thread request into main thread in addition to k8s notifications, periodically poll k8s state * address comments * label batch job pods (#41) * add hail-ci-deploy.sh (#42) * added hail-ci-deploy.sh add docker to pr-builder image * added missing deployment.yaml.in removed deployment.yaml * consistency * addessed comments * install kubectl in image (#44) `gcloud components install kubectl` is failing with a non-obvious error message so I installed it directly * make batch subproject (#46) * make batch subproject fixed more deployment bugs * updated build image * fix test race condition job can complete before it is cancelled * authenticate docker to push to gcr.io (#48) * authenticate docker to push to gcr.io * add gcloud quiet (-q) * remove errant tab * logging to match ci * do callback asynchronously * do callback asynchronously * expose pod name as well (#49) * restart ci on deploy (#50) * Fix SHA check (#51) * Update hail-ci-deploy.sh * Update deployment.yaml.in * Update hail-ci-deploy.sh * Update hail-ci-deploy.sh * add /jobs/<id>/log endpoint (#52) * add /jobs/<id>/log endpoint added to api, client return completed job logs (including deleted ones) return in-progress logs (if there are any) return 404 (not empty) if there no logs to be found status['log'] returns the same log * fixed bug * fixed typo * prep to merge into monorepo clean up unused files, experiments (jupyter, spark, etc.) * updated build image * fixes hail-ci-build.sh handles all known projects fix batch to deploy only when changed * fixed typo * fixed README.md conflict. * activate environment * add cloudtools to list of project-changed.py projects
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
From @cseed on August 31, 2015 22:23
This will involve deciding how to represent phasing information.
Copied from original issue: cseed/hail#38
The text was updated successfully, but these errors were encountered: