Journal resubmission, second preprint submission
This is the git commit associated with the journal resubmission and the second submission to bioRxiv (webpage, pdf). Major changes include:
- New sections on protein-protein interactions, MHC-peptide binding, graph convolutions, neuroscience, model uncertainty, natural language processing in healthcare, and cryo-electron microscopy.
- Major revisions to the transcription factor, promoter and enhancer, chemical representation, and evaluation sections.
- A table and figures to introduce neural network architectures.
- 9 new authors and over 100 new references.
- Manubot upgrades.
- Typo, grammar, and formatting corrections.
A complete diff is available on bioRxiv as a supplementary file and the HTML permalink is here.