Temporarilly disabled non-globin metric until finished testing

getzlab · Apr 17, 2019 · 5fe48d8 · 5fe48d8
1 parent af9b788
commit 5fe48d8
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/src/Metrics.cpp b/src/Metrics.cpp
@@ -355,8 +355,8 @@ std::ofstream& operator<<(std::ofstream &stream, rnaseqc::Metrics &counter)
         "Mapped Reads",
         "Mapped Unique Reads",
         "Mismatched Bases",
-        "Non-Globin Reads",
-        "Non-Globin Duplicate Reads",
+//        "Non-Globin Reads",
+//        "Non-Globin Duplicate Reads",
         "Reads excluded from exon counts",
         "Reads used for Intron/Exon counts",
         "rRNA Reads",

diff --git a/src/RNASeQC.cpp b/src/RNASeQC.cpp
@@ -522,7 +522,7 @@ int main(int argc, char* argv[])
         output << "Mapping Rate\t" << counter.frac("Mapped Reads", "Unique Mapping, Vendor QC Passed Reads") << endl;
         output << "Unique Rate of Mapped\t" << counter.frac("Mapped Unique Reads", "Mapped Reads") << endl;
         output << "Duplicate Rate of Mapped\t" << counter.frac("Mapped Duplicate Reads", "Mapped Reads") << endl;
-        output << "Duplicate Rate of Mapped, excluding Globins\t" << counter.frac("Non-Globin Duplicate Reads", "Non-Globin Reads") << endl;
+//        output << "Duplicate Rate of Mapped, excluding Globins\t" << counter.frac("Non-Globin Duplicate Reads", "Non-Globin Reads") << endl;
         output << "Base Mismatch\t" << counter.frac("Mismatched Bases", "Total Bases") << endl;
         output << "End 1 Mapping Rate\t"<< 2.0 * counter.frac("End 1 Mapped Reads", "Unique Mapping, Vendor QC Passed Reads") << endl;
         output << "End 2 Mapping Rate\t"<< 2.0 * counter.frac("End 2 Mapped Reads", "Unique Mapping, Vendor QC Passed Reads") << endl;