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getzlab

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  1. rnaseqc rnaseqc Public

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    C++ 159 19

  2. SignatureAnalyzer SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    Python 77 21

  3. deTiN deTiN Public

    DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

    Jupyter Notebook 49 21

  4. MutSig2CV MutSig2CV Public

    MutSig2CV from Lawrence et al. 2014

    MATLAB 31 9

  5. dalmatian dalmatian Public

    dalmatian is a collection of high-level companion functions for Firecloud and FISS.

    Python 18 13

  6. CPTAC_PanCan_PTM_2023 CPTAC_PanCan_PTM_2023 Public

    Jupyter Notebook 16 1

Repositories

Showing 10 of 82 repositories
  • PurityReviewer Public

    Suite of purity reviewers and review components

    getzlab/PurityReviewer’s past year of commit activity
    Jupyter Notebook 2 0 0 1 Updated Mar 19, 2025
  • ABSOLUTE Public

    ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38

    getzlab/ABSOLUTE’s past year of commit activity
    R 7 BSD-3-Clause 6 2 1 Updated Mar 19, 2025
  • SVelfie Public
    getzlab/SVelfie’s past year of commit activity
    Python 0 0 0 0 Updated Mar 18, 2025
  • SNVReviewer Public

    AnnoMate Reviewer for annotating and comparing single nucleotide variant(SNV)

    getzlab/SNVReviewer’s past year of commit activity
    Python 0 0 0 0 Updated Mar 12, 2025
  • neoag-tools Public Forked from jnktsj/neoag-tools

    Phasing and translation modules for neoantigen analysis

    getzlab/neoag-tools’s past year of commit activity
    Python 0 2 0 0 Updated Mar 12, 2025
  • getzlab.github.io Public Forked from drummondlab/drummondlab.github.io

    Getz Lab site

    getzlab/getzlab.github.io’s past year of commit activity
    HTML 4 60 0 1 Updated Mar 10, 2025
  • SVelfie_old_production_repo_delete Public

    SVelfie (equivalent to v14 of the previously named SSVGAR module"

    getzlab/SVelfie_old_production_repo_delete’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Mar 3, 2025
  • DIGDriver Public Forked from oliverpriebe/DIGDriver

    Lab-internal version of DIG

    getzlab/DIGDriver’s past year of commit activity
    Python 0 BSD-3-Clause 6 0 0 Updated Feb 28, 2025
  • canine Public

    A modular, high-performance computing solution to run jobs using SLURM

    getzlab/canine’s past year of commit activity
    Python 6 BSD-3-Clause 6 14 3 Updated Feb 28, 2025
  • AsymTools2 Public

    AsymTools is a package for analyzing transcriptional and replicative mutational strand asymmetries in cancer sequencing datasets.

    getzlab/AsymTools2’s past year of commit activity
    MATLAB 2 1 0 0 Updated Feb 25, 2025
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