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Support reference panels in msav format and decay parameter #128

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merged 39 commits into from
Dec 6, 2023

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@seppinho seppinho commented Dec 6, 2023

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Update create-release.yml
features/msav-support

Conflicts:
	files/imputationserver-beagle.yaml
	files/imputationserver-hla.yaml
	files/imputationserver-pgs.yaml
	files/minimac4.yaml
	pom.xml
	src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
Conflicts:
	files/imputationserver-beagle.yaml
	files/imputationserver-hla.yaml
	files/imputationserver-pgs.yaml
	files/minimac4.yaml
	pom.xml
	src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
Conflicts:
	files/imputationserver-beagle.yaml
	files/imputationserver-hla.yaml
	files/imputationserver-pgs.yaml
	files/minimac4.yaml
	pom.xml
	src/main/java/genepi/imputationserver/steps/imputation/ImputationPipeline.java
	src/test/java/genepi/imputationserver/steps/ImputationTest.java
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codecov bot commented Dec 6, 2023

Codecov Report

Attention: 30 lines in your changes are missing coverage. Please review.

Comparison is base (09870a0) 51.38% compared to head (d49ae9a) 51.48%.

Files Patch % Lines
...ionserver/steps/imputation/ImputationPipeline.java 0.00% 13 Missing ⚠️
.../java/genepi/imputationserver/util/FileMerger.java 40.00% 9 Missing ⚠️
...ationserver/steps/imputation/ImputationMapper.java 0.00% 8 Missing ⚠️
Additional details and impacted files
@@             Coverage Diff              @@
##             master     #128      +/-   ##
============================================
+ Coverage     51.38%   51.48%   +0.10%     
- Complexity      677      678       +1     
============================================
  Files            59       59              
  Lines          4521     4518       -3     
  Branches        568      566       -2     
============================================
+ Hits           2323     2326       +3     
+ Misses         2021     2015       -6     
  Partials        177      177              

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@seppinho seppinho merged commit f9a0270 into master Dec 6, 2023
3 of 4 checks passed
@seppinho seppinho deleted the features/msav-support branch December 6, 2023 11:45
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2 participants