v1.8.0-beta4 #126
Merged
v1.8.0-beta4 #126
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Provenance: from installer script https://github.com/statgen/Minimac4/releases/tag/v4.1.6
Codecov ReportAll modified and coverable lines are covered by tests ✅
Additional details and impacted files@@ Coverage Diff @@
## features/msav-support #126 +/- ##
========================================================
Coverage 51.48% 51.48%
Complexity 678 678
========================================================
Files 59 59
Lines 4518 4518
Branches 566 566
========================================================
Hits 2326 2326
Misses 2015 2015
Partials 177 177 ☔ View full report in Codecov by Sentry. |
seppinho
added a commit
that referenced
this pull request
Dec 6, 2023
* Add new minimac4 binary and adapt execution command * Add msav reference panels * Adapt test data to include GT tag * Fix input data * Fix input data for hg38 test cases * Ignore obsolete --myChromosome option * Update run-tests.yml * Update run-tests.yml * Update to new parameter --sites for writing info files * Add new minR2 parameter to minimac4 and remove R2 pipeline filter * Add prefix mis_ to all MIS tags in VCF file * Fix VCF header test case with new prefix * Update to latest minimac4 binary * Add min-r2 parameter to command only if minR2 > 0 * Update to pgs-calc version v0.9.10 * Prepare release v1.7.0-rc1 * Update to latest minimac4 (commit 9c653eb) * Prepare release 1.7.0-rc2 * Update minimac4 to 8498d * Add HTS tag to m4 format option * Update minimac4 and rebuild msav files * Update DefaultPreferenceStore.java * Fix line number in new test case (from master) due to new M4 * Update to minimac v4.1.0 * Update to minimac v4.1.4 * Add minimac4 decay option * Prepare release v1.8.0-beta1 * Update imputation engine log to v4.1.4 * Prepare release v1.8.0-beta2 * Update to minimac v4.1.5 * Prepare release v1.8.0-beta3 * Prepare release v1.8.0-beta4 (#126) Provenance: from installer script https://github.com/statgen/Minimac4/releases/tag/v4.1.6 --------- Co-authored-by: Andy Boughton <abought@gmail.com>
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Purpose
Prepares a new version of imputatioserver (based on
feature/msav-support) that uses updated minimac 4.1.6.I will be testing this in parallel in the TIS environment this afternoon. Made available here due to the narrow release timeline.
Provenance: binary comes from installer script
https://github.com/statgen/Minimac4/releases/tag/v4.1.6