1.0.0 Release

[hexylena]

TODO before release:

• Fix pypi credentials
• Ask bioblend to make a new release. Ping @nsoranzo (e.g. otherwise renaming datasets doesn't work Error renaming dataset due to missing content-type header galaxyproject/bioblend#213)
• await new bioblend release

Missing Parameters

E.g. parsec history update_history was missing numerous params that are documented in help but are not in the argspec.

These are now fixed and function.

JSON Inputs

Previously json inputs did not function. Now they do. Additionally loading from stdin, file, or raw string is supported. E.g. all of these will function the same:

cat params.json | parsec jobs search_jobs -; # Stdin
parsec jobs search_jobs params.json; # Filename
parsec jobs search_jobs $(cat params.json); # String argument

Better Example

I've added an example where I create a history, run a tool, and the launch a workflow and check its status in the terminal.

Shinier Docs

• https://parsec.readthedocs.io/en/dev/readme.html
• https://parsec.readthedocs.io/en/dev/commands.html

CLI Simplification

moved commands into subcommands. No longer do you get this gigantic list of a thousand things you can do, instead just:

and then the subcommands are further refined:

[hexylena]

Almost ready to release. Thanks @nsoranzo for the bioblend release. @bgruening any concerns after your recent test? Anyone else in IUC want to try it out? It is starting to be a very nice toolkit

[hexylena]

@bgruening https://github.com/galaxy-iuc/parsec/blob/dev/docs/cookbook.rst#capturing-execution-state-as-xunit-output

[bgruening]

@erasche release!!! This is an amazing project! Let's get it out!