3.1.40-SNAPSHOT

Bump version of  snapshot release

3.1.11-SNAPSHOT

Simple_Neurite_Tracer-3.1.11-SNAPSHOT

Suppress spurious logging when importing Trees directly from files

Simple_Neurite_Tracer-3.1.5

Maintenance release (including fixes for #26 and #27 and an exception triggered when skeletonizing paths near image boundaries)

[Uploaded to the Java 8 update site on 2017.08.14]

Simple_Neurite_Tracer-3.1.4

Maintenance release (including fixes for hIPNAT#5)

[Uploaded to the Java 8 update site on 2017.06.05]

Simple_Neurite_Tracer-3.1.1

Maintenance release (including fixes for #18)

[Uploaded to the Java 8 update site on 2017.02.28]

Simple_Neurite_Tracer-3.1.0

• 3D Snap-to neurite cursor (Described in #1)
• Auto-canvas activation, and arrangement of windows that is aware of multiple displays
• Paths can now be rendered with arbitrary colors and coloring schemes, including coloring by SWC type
• Paths can now be rendered as topographic skeletons through filtering options (SWC type and area ROI). A summary of skeletonized properties is also possible.
• Advanced options are now accessible through the Tracing>Options command
• Many more keyboard shortcuts and bug fixes for existing ones (#15)
• Improved organization of main dialog, menu commands and startup prompt (#11)
• Fixed deprecated API calls
• Updated documentation (#11)

[Uploaded to the Java 8 update site on 2017.01.03]

Simple_Neurite_Tracer-3.0.6

• Paths can now be exported as ImageJ ROIs and stored in the image overlay or the ROI Manager (#9)
• Preliminary support for Vaa3D's ESWC file format, by recognizing .eswc files as valid SWC input. (ESWC extends the default SWC data by appending 3 columns to SWC files: segment_id, level, feature: These are not yet processed by SNT) (#9)
• The plugin no longer discards ROIs stored in the non-destructive image overlay (#12). This means that ROI annotations are directly accessible during tracing, and will no longer be reset when starting/terminating the plugin
• On exit, XZ/ZY images are only discarded if they have not been modified during the session.
• Several GUI tweaks and improvements that make the plugin more usable on small screens:
  • Visibility of tracing panes can be toggled at will, and brought together via a new Arrange panes command
  • Most commands will now work when a pane has been closed. This means that tracing can now be performed in 1, 2, or 3 panes.
  • Footprint of Path List window has been reduced
• Documentation has been improved

[Uploaded to the Java 8 update site on 2016.10.30]

Simple_Neurite_Tracer-3.0.5

• Implemented a new batch processing plugin for Sholl analysis on tracings (documentation)
• GUI improvements including an improved Help> Menu, and more informative error messages when importing SWC files with disconnected paths
• This release also includes undocumented changes in previous 3.0.x versions:
  • Several improvements in SWC import, including SWC files containing spurious white-space characters, an a bug that that made SWC tags to be ignored on import
  • Allow Sholl to be performed on subsets of paths labelled with SWC tags
  • Do not allow duplicated data points in Sholl profiles

[Uploaded to the Java 8 update site on 2016.10.25]