{data}[GCC/9.3.0] netCDF.Serial v4.7.4 #11574

mboisson · 2020-10-26T14:12:22Z

(created using eb --new-pr)

boegelbot · 2020-10-26T15:23:21Z

@mboisson: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/329229147
Output from first failing test suite run:

Failed to determine merge base (ec: 1, output: ''), falling back to specifying target branch develop
======================================================================
Failed to determine merge base (ec: 1, output: ''), falling back to specifying target branch develop
ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)

Check whether any conflicts occur in software dependency graphs.
List of added easyconfig files in this PR: netCDF.Serial-4.7.4-GCC-9.3.0.eb
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 148, in test_conflicts
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 132, in test_dep_graph
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 439, in test_dep_versions_per_toolchain_generation
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_sanity_check_paths (test.easyconfigs.easyconfigs.EasyConfigTest)
Make sure specified sanity check paths adher to the requirements.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 502, in test_sanity_check_paths
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 10802 tests in 516.937s

FAILED (errors=4)
ERROR: Not all tests were successful.

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Please talk to my owner @boegel if you notice you me acting stupid),
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boegelbot · 2020-11-02T19:23:19Z

@mboisson: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/342216909
Output from first failing test suite run:

Failed to determine merge base (ec: 1, output: ''), falling back to specifying target branch develop
Failed to determine merge base (ec: 1, output: ''), falling back to specifying target branch develop

List of added easyconfig files in this PR: netCDF.Serial-4.7.4-GCC-9.3.0.eb
======================================================================
ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 148, in test_conflicts
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 132, in test_dep_graph
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 439, in test_dep_versions_per_toolchain_generation
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_sanity_check_paths (test.easyconfigs.easyconfigs.EasyConfigTest)
Make sure specified sanity check paths adher to the requirements.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 502, in test_sanity_check_paths
    self.process_all_easyconfigs()
  File "test/easyconfigs/easyconfigs.py", line 121, in process_all_easyconfigs
    EasyConfigTest.parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 460, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 323, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 10813 tests in 525.479s

FAILED (errors=4)
ERROR: Not all tests were successful.

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Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

verdurin · 2020-11-03T11:38:13Z

This is awaiting the final merging of HDF5.Serial from the dual_serial_mpi branch cf. #11155

boegelbot · 2022-10-13T18:01:11Z

@mboisson: Tests failed in GitHub Actions, see https://github.com/easybuilders/easybuild-easyconfigs/actions/runs/3244322640
Output from first failing test suite run:

ERROR: test_conflicts (test.easyconfigs.easyconfigs.EasyConfigTest)
Check whether any conflicts occur in software dependency graphs.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 326, in test_conflicts
    self.assertFalse(check_conflicts(self.ordered_specs, modules_tool(), check_inter_ec_conflicts=False),
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_graph (test.easyconfigs.easyconfigs.EasyConfigTest)
Unit test that builds a full dependency graph.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 313, in test_dep_graph
    dep_graph(fn, self.ordered_specs)
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

======================================================================
ERROR: test_dep_versions_per_toolchain_generation (test.easyconfigs.easyconfigs.EasyConfigTest)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test/easyconfigs/easyconfigs.py", line 837, in test_dep_versions_per_toolchain_generation
    for ec in self.ordered_specs:
  File "test/easyconfigs/easyconfigs.py", line 278, in ordered_specs
    EasyConfigTest.resolve_all_dependencies()
  File "test/easyconfigs/easyconfigs.py", line 216, in resolve_all_dependencies
    cls._parsed_easyconfigs, modules_tool(), retain_all_deps=True)
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 461, in resolve_dependencies
    raise_error_missing_deps(totally_missing, extra_msg="no easyconfig file or existing module found")
  File "/opt/hostedtoolcache/Python/2.7.18/x64/lib/python2.7/site-packages/easybuild/tools/robot.py", line 324, in raise_error_missing_deps
    raise EasyBuildError(error_msg)
EasyBuildError: 'Missing dependencies: HDF5.Serial/1.10.6-GCC-9.3.0 (no easyconfig file or existing module found)'

----------------------------------------------------------------------
Ran 15483 tests in 693.131s

FAILED (errors=3)
ERROR: Not all tests were successful

bleep, bloop, I'm just a bot (boegelbot v20200716.01)
Please talk to my owner @boegel if you notice you me acting stupid),
or submit a pull request to https://github.com/boegel/boegelbot fix the problem.

boegel · 2024-01-14T08:45:09Z

closing this since GCC/9.3.0 is deprecated, see https://docs.easybuild.io/policies/toolchains

adding easyconfigs: netCDF.Serial-4.7.4-GCC-9.3.0.eb

b29de54

mboisson mentioned this pull request Oct 26, 2020

Supporting non-MPI versions of Boost, HDF5, netCDF and the like #11112

Open

verdurin mentioned this pull request Nov 2, 2020

{tools}[GCC/9.3.0] ecCodes v2.19.0 #11598

Closed

verdurin closed this Nov 2, 2020

verdurin reopened this Nov 2, 2020

mboisson closed this Oct 13, 2022

mboisson reopened this Oct 13, 2022

boegel added the update label Jan 14, 2024

boegel added this to the 4.x milestone Jan 14, 2024

boegel closed this Jan 14, 2024

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{data}[GCC/9.3.0] netCDF.Serial v4.7.4 #11574

{data}[GCC/9.3.0] netCDF.Serial v4.7.4 #11574

mboisson commented Oct 26, 2020

boegelbot commented Oct 26, 2020

boegelbot commented Nov 2, 2020

verdurin commented Nov 3, 2020

boegelbot commented Oct 13, 2022

boegel commented Jan 14, 2024

{data}[GCC/9.3.0] netCDF.Serial v4.7.4 #11574

{data}[GCC/9.3.0] netCDF.Serial v4.7.4 #11574

Conversation

mboisson commented Oct 26, 2020

boegelbot commented Oct 26, 2020

boegelbot commented Nov 2, 2020

verdurin commented Nov 3, 2020

boegelbot commented Oct 13, 2022

boegel commented Jan 14, 2024