Merge pull request #17610 from bedroge/20230328132212_new_pr_Bismark0240

{bio}[GCC/11.3.0] Bismark v0.24.0

easybuild/easyconfigs/b/Bismark/Bismark-0.24.0-GCC-11.3.0.eb

@@ -0,0 +1,41 @@
+##
+# This file is an EasyBuild reciPY as per https://github.com/easybuilders/easybuild
+#
+# Copyright:: Copyright 2013-2014 The Cyprus Institute
+# Authors:: Thekla Loizou <t.loizou@cyi.ac.cy>
+# License:: MIT/GPL
+#
+# Updated to 0.23.1
+# J. Sassmannshausen NHS/GSTT
+
+easyblock = 'Tarball'
+
+name = 'Bismark'
+version = '0.24.0'
+
+homepage = 'https://www.bioinformatics.babraham.ac.uk/projects/bismark/'
+description = "A tool to map bisulfite converted sequence reads and determine cytosine methylation states"
+
+toolchain = {'name': 'GCC', 'version': '11.3.0'}
+
+source_urls = ['https://github.com/FelixKrueger/Bismark/archive/refs/tags/']
+sources = ['%(version)s.tar.gz']
+checksums = ['dd58957bd6eac44f3a6e74e9a5ef69c8d19da0e0b64feb7d019a994fe6087d7d']
+
+dependencies = [
+    ('Perl', '5.34.1'),
+    ('Bowtie2', '2.4.5'),
+    ('SAMtools', '1.16.1'),
+]
+
+sanity_check_commands = ['bismark --help']
+
+sanity_check_paths = {
+    'files': ['bismark', 'bismark2bedGraph', 'bismark2report', 'bismark_genome_preparation',
+              'bismark_methylation_extractor', 'coverage2cytosine', 'deduplicate_bismark'],
+    'dirs': [],
+}
+
+modextrapaths = {'PATH': ''}
+
+moduleclass = 'bio'