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Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
fjansson
added a commit
that referenced
this pull request
Jun 6, 2023
Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
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Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
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Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
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Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
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Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
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Open boundary conditions by Frans Liqui Lung Poisson solver with FFTW and OpenBC from CaNS by Pedro Simões Costa Merged and updated for mixed precision by Fredrik Jansson Squashed commit of the following: commit 9f10ba2 Merge: bec7d8c cc84edf Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Dec 14 15:52:02 2022 +0100 Merge remote-tracking branch 'frans/ruisdael' into ruisdael commit bec7d8c Merge: 8d64687 a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Dec 13 17:17:00 2022 +0100 Merge branch 'ruisdael_exner' into ruisdael commit cc84edf Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:44:49 2022 +1100 removed old code to allow for different initial pressure solver commit 41edb30 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Tue Dec 13 11:36:33 2022 +1100 adjusted initial convergence correction to be compatible with cosine fourier solver, implemented in modstartup to avoid cross dependency conflict between modpois and modopenboundaries commit 09498f6 Author: Frans Liqui Lung <nmfl@aa6-100.bullx> Date: Sun Oct 2 20:26:12 2022 +0000 removed print from modsynturb and removed hard set top layer of temperature in modboundary commit 031b97b Author: Frans Liqui Lung <nmfl@ac6-103.bullx> Date: Thu Sep 15 10:29:21 2022 +0000 fixed timing issue in modsynturb commit 8d64687 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Nov 17 14:43:12 2022 +0100 Open boundary conditions and FFTW FFTW can be used also with open lateral boundary conditions. Pressure solver boundary condition is Neumann on the open boundaries. The following modifications are made for the direction(s) with open boundaries: * use Discrete Cosine Transform instead of FFT. - FFTW_REDFT_10 forward - FFTW_REDFT_01 back * normalization constant is different, a factor 2 per direction * the eigenvalues xrt, yrt are different By Pedro Simões Costa and Fredrik Jansson commit a77d2e7 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 15:07:13 2022 +0200 allow multiple planes for crossxz, crossyz and in any MPI tile commit 98dbc56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 2 11:22:12 2021 +0100 Added option to disable certain cross-sections (xy, xz, yz) commit 22174b0 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Sep 16 09:37:54 2022 +0200 add PHYSICS/lconstexner flag, output exnf, exnh to profiles.nc commit 854ca46 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Sep 15 14:44:10 2022 +0200 try using the initial pressure profile in the exner function commit 0fd18d2 Merge: f2fe301 41bd220 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:58 2022 +0200 Merge pull request #77 from natalieth/patch-1 rename randomNumbers commit f2fe301 Merge: 4b76227 8784487 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Aug 8 15:51:29 2022 +0200 Merge pull request #76 from natalieth/patch-2 remove comma (typo) commit 8784487 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:25:22 2022 +0200 remove comma (typo) commit 41bd220 Author: Natalie Theeuwes <19662980+natalieth@users.noreply.github.com> Date: Mon Aug 8 15:23:19 2022 +0200 rename randomNumbers commit 4b76227 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Apr 6 20:15:07 2022 +0200 hypre: switch PFMG-preconditioner to use red-black smoother, faster commit bf32003 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:33:38 2022 +0200 add SOLVER namelist variable hypre_logging for setting hypre printing amount commit 2db7993 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Apr 4 18:32:33 2022 +0200 add alternative name for hypre library for Ubuntu commit 94f360a Author: Fredrik Jansson <fjansson@abo.fi> Date: Sat Apr 2 09:11:15 2022 +0200 hypre singularity-fix: fix off-by-one, move anchor point cose to top of domain commit 729ce43 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Apr 1 16:35:02 2022 +0200 print wall time of poisson solver, try without modifying neighbors of the special element, zero guess in RK step 1 commit 2f59d56 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Mar 29 21:28:30 2022 +0200 iterative solver: try making the matrix non-singular for better convergence commit 28717a2 Author: Frans Liqui Lung <frans.liquilung@gmail.com> Date: Mon Mar 7 15:34:02 2022 +1100 added flag for compatibility periodic simulations commit 371ec7e Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:25:38 2022 +0100 hypre: update dummy routine in modnohypre to have same parameters as real routine commit 4b186a0 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Fri Jan 28 15:40:14 2022 +1100 finalised extra hypre input for preconditioner commit 9401ce6 Author: Frans Liqui Lung <f.p.a.liquilung-1@tudelft.nl> Date: Tue Jan 11 16:43:16 2022 +1100 disconnected iterations preconditionar from max iterations total of pressure solver (HYPRE) commit 7247c00 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 17:09:06 2021 +0100 fixed mistake in initial divergence correction commit e9c5dd8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 14:11:34 2021 +0100 added divergence correction for initial field when a heterogneous initialisation is used commit 55e7fe4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Mon Dec 20 13:18:01 2021 +0100 Changed hypre coding to take solver as an input to the hypre subroutines, such that multiple solvers can be created and coexist. This is a preparation to be able to use a different solver to remove any divergence from a heterogneous starting field. Doesn't change anything to the performance/results of the solvers. commit 3b4aade Merge: a4289f0 3f42824 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Feb 14 18:47:40 2022 +0100 Merge commit '3f428245ff' into ruisdael commit 3f42824 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 11:48:44 2021 +0100 fixed rhointi bug found in modopenboundary during tests commit 1ae6709 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:52:33 2021 +0100 Adjusted program for openboundaries commit 73e4926 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:37:57 2021 +0100 fixed bugs found in modstartup during compilation commit e864a04 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:32:28 2021 +0100 fixed bugs found in advection during compilation commit c9c9a10 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:23:13 2021 +0100 Adjusted modmpi for openboundaries commit 4d9fe7f Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:20:24 2021 +0100 fixed bugs found in modopenboundary during compilation commit 8242f56 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:09:56 2021 +0100 Adjusted modlsm for openboundaries commit 78de429 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 09:04:31 2021 +0100 Adjusted modsurface for openboundaries commit c7a8aae Author: Frans Liqui Lung <franslql@hotmail.com> Date: Wed Dec 8 08:46:29 2021 +0100 Adjusted modstartup for openboundaries commit 356c2af Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:46:56 2021 +0100 Adjusted modglobal for openboundaries commit b721669 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:32:08 2021 +0100 Adjusted modpois for openboundaries commit 5b6810b Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:25:55 2021 +0100 Adjusted modgenstat for openboundaries, covariances take non-zero w profile into account commit 2151204 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:18:28 2021 +0100 Adjusted modforces for openboundaries commit 24db68a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:16:47 2021 +0100 Adjusted modsubgrid for openboundaries commit d250ed8 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:14:36 2021 +0100 Adjusted advection for openboundaries commit e174ff4 Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 16:04:57 2021 +0100 Adjusted advec_2nd for openboundaries commit dc2300d Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:40:53 2021 +0100 Adjusted modhypre for openboundaries commit 6d9b23a Author: Frans Liqui Lung <franslql@hotmail.com> Date: Tue Dec 7 15:35:30 2021 +0100 Added modopenboundary.f90 and modsynturb.f90 commit a4289f0 Author: Bart van Stratum <bart@vanstratum.com> Date: Wed Sep 8 14:54:23 2021 +0200 Added CO2 scalar for A-Gs net assimilation, for offline budget checks commit 02372b5 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 09:43:17 2021 +0200 Added A-Gs option without emission module commit 8c7881f Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Sep 7 08:08:14 2021 +0200 Added CO2 respiration/assimilation to cross-section and time series. commit 4dc4a0b Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 16:36:23 2021 +0200 Added A-Gs to the new land surface model commit 3050704 Author: Bart van Stratum <bart@vanstratum.com> Date: Mon Sep 6 12:05:31 2021 +0200 Added basic infrastructure for A-Gs and communication with emission module commit bdfa25e Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 16:56:12 2021 +0200 AG-s <-> emission interface indicators now relative to full list of scalar fields commit 0424c3c Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Jun 8 15:53:49 2021 +0200 Emission <-> AGS interface commit c05eee0 Merge: d329736 002a862 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Nov 9 12:13:43 2020 +0100 Merge branch 'ruisdael_lsm' into ruisdael commit 002a862 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Nov 6 11:30:33 2020 +0100 Calculate obukhov length from tile averaged fluxes, instead of calculating a tiled mean commit 01a48d8 Author: Bart van Stratum <bart@vanstratum.com> Date: Tue Nov 3 09:12:35 2020 +0100 Bugfix harmonic mean calculation (which is currently not used in the code..) commit d329736 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 27 11:25:58 2020 +0100 update fix for #58 - allow lsmcrossection also for new LSM isurf=11 commit 8b42f82 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 23 11:03:29 2020 +0200 emission: remove MPI-parallel .nc read, add better namelist error reporting commit fa1a4b5 Merge: 15a81a3 8230865 Author: Fredrik Jansson <fjansson@abo.fi> Date: Fri Oct 16 15:42:00 2020 +0200 Merge branch 'ruisdael_lsm' into ruisdael commit 8230865 Author: Bart van Stratum <bart@vanstratum.com> Date: Fri Oct 16 10:18:03 2020 +0200 Added NetCDF file with van Genuchten parameters commit 15a81a3 Merge: 6eddb8f 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:57:17 2020 +0200 Merge branch 'to4.3_Fredrik' into ruisdael commit 58f9d33 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:56:53 2020 +0200 advec_kappa : remove debug write() commit 6eddb8f Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:43:57 2020 +0200 modnudgebounday: use random_number() instead of rand() for better intel/gnu compatibility commit b70f80e Merge: 796eaae 6b4a3ab Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Oct 15 14:04:57 2020 +0200 Merge branch '4.2_emission' into ruisdael commit 6b4a3ab Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Oct 15 13:43:10 2020 +0200 Renaming of emission related variables commit 6b199b3 Author: Fredrik Jansson <fjansson@abo.fi> Date: Mon Oct 12 17:01:12 2020 +0200 advec_kappa: do advection only for the k-range with non-zero input field commit 85b2be8 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Thu Oct 1 13:57:37 2020 +0200 Add intent to slabsum arguments commit 5887bd0 Author: Jisk Attema <j.attema@esciencecenter.nl> Date: Tue Sep 29 15:13:12 2020 +0200 gfortran switches when using default-real-8, constants and variables explicitly declared as double will become quadruples, which we dont want for DALES. quadruple precision could even result in software fallback, which is much slower. Adding the default-double-8 keeps doubles at double precision. Aliging stuff on 64-bit boundaries could help a bit with vectorization. Not initializing variables will speed things up when using large arrays commit 7ebd462 Author: Fredrik Jansson <fjansson@abo.fi> Date: Wed Oct 7 18:59:33 2020 +0200 fix error in previous fix of #48 - used wrong time array in ls forcing commit e295c35 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 10:01:40 2020 +0200 Update benchmark cases to use the standard kappa scheme 7 instead of the removed experimental one commit d088437 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:56:14 2020 +0200 Remove experimental kappa scheme iadv=77 which is now redundant. The non-uniform grid support has been merged into the main kappa scheme. commit 20b27f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Tue Oct 6 09:45:00 2020 +0200 Optimized advec_kappa scheme - rlim function inlined and rewritten without division and eps1 - both branches of if uvw0 > 0 calculated, then selected in order to enable vectorization. by Jisk Attema and Fredrik Jansson commit d307f11 Merge: a73ad93 7f86be4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:53:16 2020 +0200 Merge to4.3 into 4.2_emission commit a73ad93 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 22 10:43:18 2020 +0200 Included all scalar fields in crosssection output (similar to fielddump) commit 78e6594 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 15 15:13:54 2020 +0200 Improved bookkeeping of scalar field numbers and names commit 7f23960 Merge: 038d2b6 c2db0ee Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:05:02 2020 +0200 Merge branch 'to4.3_lsm' into ruisdael_lsm commit c2db0ee Merge: 704d145 7f86be4 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 11:02:57 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm commit 704d145 Author: julietbravo <bart@vanstratum.com> Date: Mon Sep 7 10:31:11 2020 +0200 Small fix in calculation liq. water fraction, plus added cleanup of arrays commit c1eb5a4 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 15:02:36 2020 +0200 Fixed dynamic tile fraction for cases with open water commit 4aec697 Author: julietbravo <bart@vanstratum.com> Date: Fri Sep 4 11:33:18 2020 +0200 Added water tile to time series statistics commit 13e4129 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:05:35 2020 +0200 Removed temporary forcing at lateral boundaries commit 36730a8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Sep 1 15:02:30 2020 +0200 Added boundary nudging of scalar fields commit 0069bf4 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 30 15:43:29 2020 +0200 Added additional variables to surface cross-sections commit 6637916 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 14:12:40 2020 +0200 Modified modlsmcrosssection for new LSM commit 45c6b5e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 12:45:14 2020 +0200 Store/load the water tiles for restarts (results = bitwise identical now) commit 5925ee2 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 21 09:19:12 2020 +0200 Fixed some MPI issues in new LSM commit 3f8c6ac Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 20 11:55:18 2020 +0200 First ~working version with water tile (still has some issues...) commit e4c0755 Merge: a6ca5f1 f470b41 Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 17 15:39:12 2020 +0200 Merge remote-tracking branch 'upstream/to4.3' into to4.3_lsm_water commit a6ca5f1 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 17:28:34 2020 +0200 Added option to read the spatial data for heterogeneous land surfaces commit b624922 Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:53:21 2020 +0200 Added restart functionality to new LSM commit cfc205e Author: julietbravo <bart@vanstratum.com> Date: Tue Jul 7 11:00:32 2020 +0200 Added old soil grid definition, different soil interpolation types, plus fixed bug in buoyancy calculation commit a2e51fb Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 16:29:59 2020 +0200 Added calculation of liquid water reservoir (plus bugfix ra calculation) commit 491b393 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 12:21:21 2020 +0200 Added root water extraction to soil water budget commit 4891bb5 Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 11:23:16 2020 +0200 Added bulk (grid point mean) quantities needed for SGS model commit 027b03b Author: julietbravo <bart@vanstratum.com> Date: Mon Jul 6 09:01:42 2020 +0200 Added calculation of bulk (grid point mean) scalar BCs commit a0d4cbf Author: julietbravo <bart@vanstratum.com> Date: Fri Jul 3 18:02:56 2020 +0200 Working surface solver, with fluxes per tile commit 12dd3e3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jul 3 14:13:06 2020 +0200 3D emission and namelist options; emission switch (l_emission) and vertical upper limit to apply emission (kemis) commit 3184f6b Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:32:56 2020 +0200 Bugfix calculation canopy resistances commit 656839f Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 16:30:10 2020 +0200 Added calculation canopy and soil resistance commit c56c478 Author: julietbravo <bart@vanstratum.com> Date: Thu Jul 2 12:13:05 2020 +0200 Working tiled surface layer solver commit 8def726 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 16:25:10 2020 +0200 Start of tiled surface layer solver commit 2b3e826 Author: julietbravo <bart@vanstratum.com> Date: Wed Jul 1 10:00:08 2020 +0200 Added calculation hydraulic properties (van Genuchten) and diffusion solver for soil moisture commit f215e66 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 16:51:10 2020 +0200 Added calculation of soil thermal properties, and (explicit) temperature diffusion solver commit 61de721 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 14:39:31 2020 +0200 Added calculation derived van Genuchten parameters commit 3261422 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:38:47 2020 +0200 Added minimal set of time series statistics for the new LSM commit 6b5d8be Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 11:08:45 2020 +0200 Modified modlsmstat to work with the new LSM commit 6939641 Author: julietbravo <bart@vanstratum.com> Date: Tue Jun 30 09:52:26 2020 +0200 Minor changes new LSM commit 7818aeb Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:49:25 2020 +0200 Typo in modemisdata.f90 commit 0772796 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:13:57 2020 +0200 Corrected emission scalar list to work with microphysics, i.e. skip first 2 scalar fields commit 1d141d4 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 29 16:12:01 2020 +0200 Fixed incorrect NORTH/EAST boundary indices commit b7dd889 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 15:45:35 2020 +0200 Added soil grid and initialisation of soil commit 9e78c3d Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 13:52:11 2020 +0200 Added homogeneous initialisation of LSM commit db40554 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 29 12:23:47 2020 +0200 Added data structures for land-surface tiles commit 796eaae Merge: 7860bb9 e5da4f8 Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 12:01:06 2020 +0200 Merge remote-tracking branch 'origin/4.2_emission' into ruisdael Merge surface emission map code by M de Bruine commit 7860bb9 Merge: 038d2b6 f0fb85d Author: Fredrik Jansson <fjansson@abo.fi> Date: Thu Jun 25 11:58:33 2020 +0200 Merge branch 'to4.3' into ruisdael merging for gfortran 10 compatibility commit e5da4f8 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Jun 25 11:27:58 2020 +0200 Add file moddatetime for reading emission files. commit 5e47c93 Author: julietbravo <bart@vanstratum.com> Date: Mon Jun 15 12:06:48 2020 +0200 Start at implemention realistic LSM commit 5cf1aff Merge: c6c8324 038d2b6 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Jun 8 11:30:33 2020 +0200 Merge with ruisdael branch commit c6c8324 Merge: 1407034 9278ce3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 16:10:02 2020 +0200 Merge with master commit 1407034 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Fri Jun 5 15:17:20 2020 +0200 Added scaling for model resolution and domain dboundary 'nullifier' commit 038d2b6 Merge: 89b4830 1cc8a3c Author: Fredrik Jansson <jansson@cwi.nl> Date: Wed Jun 3 16:20:56 2020 +0200 Merge branch 'to4.3' into ruisdael for PR #53 - Only set `tauField` when A-gs is enabled commit baeab65 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Tue Apr 28 10:38:29 2020 +0200 Changes in documentation and compiler settings commit 89b4830 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 14 15:43:41 2020 +0200 boundary nudging: add check for tile size being sufficient to contain the nudging domain commit 8cd006c Author: Fredrik Jansson <jansson@cwi.nl> Date: Fri Apr 10 14:56:32 2020 +0200 Print warning when unspecified iadv_sv values are set to iadv_mom commit 6e208f5 Author: Fredrik Jansson <jansson@cwi.nl> Date: Tue Apr 7 13:11:48 2020 +0200 Add boundary nudging by BvS commit e61fddc Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Thu Feb 27 15:03:53 2020 +0100 Realistic surface emissions (WIP) commit 4b9dec3 Author: Marco de Bruine <m.de.bruine@vu.nl> Date: Mon Dec 9 15:37:52 2019 +0100 New emission routines: Reading (parallel netCDF) of 2D surface emission on native grid
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