Merge pull request #100 from cqframework/templatization

Templatization to work with refresh tooling

.gitignore

@@ -8,5 +8,5 @@
 /resources/ig-validation-parameters.json
 /resources/ig-new.json
 /resources/ig-new.xml
-ig.ini
 /org.hl7.fhir.publisher.jar
+template

_updatePublisher.sh

@@ -0,0 +1,49 @@
+#!/bin/bash
+dlurl=https://fhir.github.io/latest-ig-publisher/org.hl7.fhir.publisher.jar
+publisher_jar=org.hl7.fhir.publisher.jar
+root_path=./
+
+set -e
+if ! type "curl" > /dev/null; then
+	echo "ERROR: Script needs curl to download latest IG Publisher. Please install curl."
+	exit 1
+fi
+
+publisher="$root_path$publisher_jar"
+if test -f "$publisher"; then
+	echo "IG Publisher FOUND in root"
+	jarlocation="$publisher"
+	jarlocationname="Root"
+	upgrade=true
+else
+	publisher="../$publisher_jar"
+	upgrade=true
+	if test -f "$publisher"; then
+		echo "IG Publisher FOUND in parent folder"
+		jarlocation="$publisher"
+		jarlocationname="Parent Folder"
+		upgrade=true
+	else
+		echo IG Publisher NOT FOUND in input-cache or parent folder...
+		jarlocation="$root_path$publisher_jar"
+		jarlocationname="Root"
+		upgrade=false
+	fi
+fi
+
+if $upgrade ; then
+	message="Overwrite $jarlocation? [Y/N] "
+else
+	#echo Will place publisher jar here: $root_path$publisher_jar
+	echo Will place publisher jar here: $jarlocation
+	message="Ok? [Y/N]"
+fi
+
+read -r -p "$message" response
+if [[ "$response" =~ ^([yY])$ ]]; then
+	echo "Downloading most recent publisher to $jarlocationname - it's ~100 MB, so this may take a bit"
+#	wget "https://fhir.github.io/latest-ig-publisher/org.hl7.fhir.publisher.jar" -O "$jarlocation"
+	curl $dlurl -o "$jarlocation" --create-dirs
+else
+	echo cancel...
+fi

archive/README.txt

@@ -0,0 +1,4 @@
+This folder exists for the archival of resources specific to FHIR versions for which
+this Implementation Guide is declared and intended. If we need support for those versions
+(e.g., DSTU2 in this case) we will create an Implementation Guide specific to respective
+FHIR version. 

pages/cql/OpioidCQM_STU3-0.1.0.cql → archive/input/pagecontent/cql/OpioidCQMSTU3-0.1.0.cql

@@ -1,4 +1,4 @@
-library OpioidCQM_STU3 version '0.1.0'
+library OpioidCQMSTU3 version '0.1.0'
 
 using FHIR version '3.0.0'
 

ig.ini

@@ -0,0 +1,3 @@
+[IG]
+ig = input/ig-new.xml
+

ig.json

@@ -2,13 +2,24 @@
   "canonicalBase": "http://fhir.org/guides/cdc/opioid-cds",
   "version" : "3.0.2",
   "sct-edition" : "http://snomed.info/sct/731000124108",
-  "source": "opioid-cds.xml",
+  "source": "../input/opioid-cds.xml",
   "npm-name": "fhir.cdc.opioid-cds",
   "license": "CC0-1.0",
   "tool" : "jekyll",
   "paths": {
-    "resources": ["resources", "examples"],
-    "pages": "pages",
+    "resources": [
+      "examples",
+      "input/extensions",
+      "input/profiles",
+      "input/resources",
+      "input/resources/library",
+      "input/resources/activitydefinition",
+      "input/resources/plandefinition",
+      "input/vocabulary",
+      "input/vocabulary/codesystem",
+      "input/vocabulary/valueset"
+    ],
+    "pages": "input/pagecontent",
     "temp": "temp",
     "output": "output",
     "qa": "qa",
@@ -554,7 +565,7 @@
     },
 
     "ActivityDefinition/opioidcds-risk-assessment-request": {
-      "source": "activitydefinition-opioidcds-risk-assessment-request.xml",
+      "source": "activitydefinition/activitydefinition-opioidcds-risk-assessment-request.xml",
       "base": "ActivityDefinition-opioidcds-risk-assessment-request.html"
     },
     "CarePlan/example-opioidcds": {
@@ -566,47 +577,47 @@
       "base": "CodeSystem-opioidcds-indicator.html"
     },
     "Library/omtklogic": {
-      "source": "library-omtklogic.xml",
+      "source": "library/library-OMTKLogic.json",
       "base": "Library-omtklogic.html"
     },
     "Library/omtkdata": {
-      "source": "library-omtkdata.xml",
+      "source": "library/library-OMTKData.json",
       "base": "Library-omtkdata.html"
     },
     "Library/opioidcds-common": {
-      "source": "library-opioidcds-common.json",
+      "source": "library/library-OpioidCDSSTU3Common.json",
       "base": "Library-opioidcds-common.html"
     },
     "Library/opioidcds-recommendation-04": {
-      "source": "library-opioidcds-recommendation-04.xml",
+      "source": "library/library-OpioidCDSSTU3Rec04.json",
       "base": "Library-opioidcds-recommendation-04.html"
     },
     "Library/opioidcds-recommendation-05": {
-      "source": "library-opioidcds-recommendation-05.xml",
+      "source": "library/library-OpioidCDSSTU3Rec05.json",
       "base": "Library-opioidcds-recommendation-05.html"
     },
     "Library/opioidcds-recommendation-07": {
-      "source": "library-opioidcds-recommendation-07.xml",
+      "source": "library/library-OpioidCDSSTU3Rec07.json",
       "base": "Library-opioidcds-recommendation-07.html"
     },
     "Library/opioidcds-recommendation-08": {
-      "source": "library-opioidcds-recommendation-08.xml",
+      "source": "library/library-OpioidCDSSTU3Rec08.json",
       "base": "Library-opioidcds-recommendation-08.html"
     },
     "Library/opioidcds-recommendation-10": {
-      "source": "library-opioidcds-recommendation-10.json",
+      "source": "library/library-OpioidCDSSTU3Rec10.json",
       "base": "Library-opioidcds-recommendation-10.html"
     },
-    "Library/library-opioidcds-rec-10-patient-view": {
-      "source": "library-opioidcds-rec-10-patient-view.json",
+    "Library/opioidcds-rec-10-patient-view": {
+      "source": "library/library-OpioidCDSSTU3Rec10PatientView.json",
       "base": "Library-opioidcds-rec-10-patient-view.html"
     },
     "Library/opioidcds-recommendation-11": {
-      "source": "library-opioidcds-recommendation-11.json",
+      "source": "library/library-OpioidCDSSTU3Rec11.json",
       "base": "Library-opioidcds-recommendation-11.html"
     },
-    "Library/library-opioidcds-rec-11-patient-view": {
-      "source": "library-opioidcds-rec-11-patient-view.json",
+    "Library/opioidcds-rec-11-patient-view": {
+      "source": "library/library-OpioidCDSSTU3Rec11PatientView.json",
       "base": "Library-opioidcds-rec-11-patient-view.html"
     },
     "MedicationRequest/example-opioidcds": {