Merge pull request #97 from cqframework/epic-modeling-refactor

Epic modeling refactor
cqframework · Jan 17, 2020 · ce7cadd · ce7cadd
2 parents f685f6b + 5517587
commit ce7cadd
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Showing 45 changed files with 34,093 additions and 3,359 deletions.
diff --git a/.gitignore b/.gitignore
@@ -9,3 +9,4 @@
 /resources/ig-new.json
 /resources/ig-new.xml
 ig.ini
+/org.hl7.fhir.publisher.jar
diff --git a/examples/medication-example-rec-10-illicit-drugs-fentanyl.json b/examples/medication-example-rec-10-illicit-drugs-fentanyl.json
@@ -0,0 +1,13 @@
+{
+  "resourceType": "Medication",
+  "id": "example-rec-10-illicit-drugs-fentanyl",
+  "code": {
+    "coding": [
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "197696",
+        "display": "72 HR Fentanyl 0.075 MG/HR Transdermal System"
+      }
+    ]
+  }
+}
diff --git a/examples/medication-example-rec-10-illicit-drugs-oxycodone.json b/examples/medication-example-rec-10-illicit-drugs-oxycodone.json
@@ -0,0 +1,13 @@
+{
+  "resourceType": "Medication",
+  "id": "example-rec-10-illicit-drugs-oxycodone",
+  "code": {
+    "coding": [
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "1049502",
+        "display": "12 HR Oxycodone Hydrochloride 10 MG Extended Release Oral Tablet"
+      }
+    ]
+  }
+}
diff --git a/examples/medication-example-rec-11-benzo.json b/examples/medication-example-rec-11-benzo.json
@@ -0,0 +1,41 @@
+{
+  "resourceType": "Medication",
+  "id": "example-rec-11-benzo",
+  "code": {
+    "coding": [
+      {
+        "system": "urn:oid:2.16.840.1.113883.6.253",
+        "code": "6507"
+      },
+      {
+        "system": "urn:oid:2.16.840.1.113883.6.68",
+        "code": "57100040000310"
+      },
+      {
+        "system": "urn:oid:2.16.840.1.113883.6.162",
+        "code": "02974"
+      },
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "3322"
+      },
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "197591"
+      }
+    ],
+    "text": "diazepam (VALIUM) tablet"
+  },
+  "isBrand": false,
+  "isOverTheCounter": false,
+  "form": {
+    "coding": [
+      {
+        "system": "urn:oid:1.2.840.114350.1.13.90.3.7.4.698288.310",
+        "code": "tablet",
+        "display": "tablet"
+      }
+    ],
+    "text": "diazepam (VALIUM) tablet"
+  }
+}
diff --git a/examples/medication-example-rec-11-opioid.json b/examples/medication-example-rec-11-opioid.json
@@ -0,0 +1,49 @@
+{
+  "resourceType": "Medication",
+  "id": "example-rec-11-opioid",
+  "code": {
+    "coding": [
+      {
+        "system": "urn:oid:2.16.840.1.113883.6.253",
+        "code": "79777"
+      },
+      {
+        "system": "urn:oid:2.16.840.1.113883.6.68",
+        "code": "65991702100356"
+      },
+      {
+        "system": "urn:oid:2.16.840.1.113883.6.162",
+        "code": "31063"
+      },
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "161"
+      },
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "5489"
+      },
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "214182"
+      },
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "857002"
+      }
+    ],
+    "text": "HYDROcodone-acetaminophen (NORCO) tablet 5-325 mg"
+  },
+  "isBrand": false,
+  "isOverTheCounter": false,
+  "form": {
+    "coding": [
+      {
+        "system": "urn:oid:1.2.840.114350.1.13.90.3.7.4.698288.310",
+        "code": "tablet",
+        "display": "tablet"
+      }
+    ],
+    "text": "HYDROcodone-acetaminophen (NORCO) tablet 5-325 mg"
+  }
+}
diff --git a/examples/medication-example.json b/examples/medication-example.json
@@ -0,0 +1,13 @@
+{
+  "resourceType": "Medication",
+  "id": "example",
+  "code": {
+    "coding": [
+      {
+        "system": "http://www.nlm.nih.gov/research/umls/rxnorm",
+        "code": "1298088",
+        "display": "Flurazepam Hydrochloride 15 MG Oral Capsule"
+      }
+    ]
+  }
+}
diff --git a/ig.json b/ig.json
@@ -565,29 +565,17 @@
       "source": "codesystem-opioidcds-indicator.xml",
       "base": "CodeSystem-opioidcds-indicator.html"
     },
-    "Library/omtk-logic-0.1.0": {
-      "source": "library-omtk-logic-0.1.0.xml",
-      "base": "Library-omtk-logic-0.1.0.html"
+    "Library/omtklogic": {
+      "source": "library-omtklogic.xml",
+      "base": "Library-omtklogic.html"
     },
-    "Library/library-omtklogic-0-0-1": {
-      "source": "library-omtklogic-0-0-1.xml",
-      "base": "Library-omtklogic-0-0-1.html"
+    "Library/omtkdata": {
+      "source": "library-omtkdata.xml",
+      "base": "Library-omtkdata.html"
     },
-    "Library/omtk-data-0.0.1": {
-      "source": "library-omtk-data-0.0.1.xml",
-      "base": "Library-omtk-data-0.0.1.html"
-    },
-    "Library/library-omtkdata-0-0-2": {
-      "source": "library-omtkdata-0-0-2.xml",
-      "base": "Library-omtkdata-0-0-2.html"
-    },
-    "Library/omtk-modelinfo": {
-      "source": "library-omtk-modelinfo.xml",
-      "base": "Library-omtk-modelinfo.html"
-    },
-    "Library/library-opioidcds-stu3-common-0-1-0": {
-      "source": "library-opioidcds-stu3-common-0-1-0.xml",
-      "base": "Library-opioidcds-stu3-common-0-1-0.html"
+    "Library/opioidcds-common": {
+      "source": "library-opioidcds-common.json",
+      "base": "Library-opioidcds-common.html"
     },
     "Library/opioidcds-recommendation-04": {
       "source": "library-opioidcds-recommendation-04.xml",
@@ -606,20 +594,20 @@
       "base": "Library-opioidcds-recommendation-08.html"
     },
     "Library/opioidcds-recommendation-10": {
-      "source": "library-opioidcds-recommendation-10.xml",
+      "source": "library-opioidcds-recommendation-10.json",
       "base": "Library-opioidcds-recommendation-10.html"
     },
-    "Library/library-opioidcds-stu3-rec-10-patient-view-0-1-0": {
-      "source": "library-opioidcds-stu3-rec-10-patient-view-0-1-0.xml",
-      "base": "Library-opioidcds-stu3-rec-10-patient-view-0-1-0.html"
+    "Library/library-opioidcds-rec-10-patient-view": {
+      "source": "library-opioidcds-rec-10-patient-view.json",
+      "base": "Library-opioidcds-rec-10-patient-view.html"
     },
     "Library/opioidcds-recommendation-11": {
-      "source": "library-opioidcds-recommendation-11.xml",
+      "source": "library-opioidcds-recommendation-11.json",
       "base": "Library-opioidcds-recommendation-11.html"
     },
-    "Library/library-opioidcds-stu3-rec-11-patient-view-0-1-0": {
-      "source": "library-opioidcds-stu3-rec-11-patient-view-0-1-0.xml",
-      "base": "Library-opioidcds-stu3-rec-11-patient-view-0-1-0.html"
+    "Library/library-opioidcds-rec-11-patient-view": {
+      "source": "library-opioidcds-rec-11-patient-view.json",
+      "base": "Library-opioidcds-rec-11-patient-view.html"
     },
     "MedicationRequest/example-opioidcds": {
       "source": "medicationrequest-example-opioidcds.xml",