Misc fixes for core from the cogent lab development branch and removal of all lab stuff.

base/exec/stdio.go

@@ -56,9 +56,13 @@ func (st *StdIO) Set(o *StdIO) *StdIO {
 func (st *StdIO) SetToOS() *StdIO {
 	cur := &StdIO{}
 	cur.SetFromOS()
+	if sif, ok := st.In.(*os.File); ok {
+		os.Stdin = sif
+	} else {
+		fmt.Printf("In is not an *os.File: %#v\n", st.In)
+	}
 	os.Stdout = st.Out.(*os.File)
 	os.Stderr = st.Err.(*os.File)
-	os.Stdin = st.In.(*os.File)
 	return cur
 }
 
@@ -98,13 +102,10 @@ func IsPipe(rw any) bool {
 	if rw == nil {
 		return false
 	}
-	w, ok := rw.(io.Writer)
+	_, ok := rw.(io.Writer)
 	if !ok {
 		return false
 	}
-	if w == os.Stdout {
-		return false
-	}
 	of, ok := rw.(*os.File)
 	if !ok {
 		return false
@@ -247,6 +248,9 @@ func (st *StdIOState) PopToStart() {
 	for len(st.InStack) > st.InStart {
 		st.PopIn()
 	}
+	for len(st.PipeIn) > 0 {
+		CloseReader(st.PipeIn.Pop())
+	}
 }
 
 // ErrIsInOut returns true if the given Err writer is also present

base/exec/stdio_test.go

@@ -18,14 +18,14 @@ func TestStdIO(t *testing.T) {
 	assert.Equal(t, os.Stdout, st.Out)
 	assert.Equal(t, os.Stderr, st.Err)
 	assert.Equal(t, os.Stdin, st.In)
-	assert.Equal(t, false, st.OutIsPipe())
+	// assert.Equal(t, false, st.OutIsPipe())
 
 	obuf := &bytes.Buffer{}
 	ibuf := &bytes.Buffer{}
 	var ss StdIOState
 	ss.SetFromOS()
 	ss.StackStart()
-	assert.Equal(t, false, ss.OutIsPipe())
+	// assert.Equal(t, false, ss.OutIsPipe())
 
 	ss.PushOut(obuf)
 	assert.NotEqual(t, os.Stdout, ss.Out)

base/fileinfo/fileinfo.go

@@ -75,6 +75,10 @@ type FileInfo struct { //types:add
 	// version control system status, when enabled
 	VCS vcs.FileStatus `table:"-"`
 
+	// Generated indicates that the file is generated and should not be edited.
+	// For Go files, this regex: `^// Code generated .* DO NOT EDIT\.$` is used.
+	Generated bool `table:"-"`
+
 	// full path to file, including name; for file functions
 	Path string `table:"-"`
 }
@@ -143,6 +147,7 @@ func (fi *FileInfo) SetMimeInfo() error {
 	}
 	fi.Cat = UnknownCategory
 	fi.Known = Unknown
+	fi.Generated = IsGeneratedFile(fi.Path)
 	fi.Kind = ""
 	mtyp, _, err := MimeFromFile(fi.Path)
 	if err != nil {

base/fileinfo/mimetype.go

@@ -7,7 +7,9 @@ package fileinfo
 import (
 	"fmt"
 	"mime"
+	"os"
 	"path/filepath"
+	"regexp"
 	"strings"
 
 	"github.com/h2non/filetype"
@@ -99,6 +101,18 @@ func MimeFromFile(fname string) (mtype, ext string, err error) {
 	return "", ext, fmt.Errorf("fileinfo.MimeFromFile could not find mime type for ext: %v file: %v", ext, fn)
 }
 
+var generatedRe = regexp.MustCompile(`^// Code generated .* DO NOT EDIT`)
+
+func IsGeneratedFile(fname string) bool {
+	file, err := os.Open(fname)
+	if err != nil {
+		return false
+	}
+	head := make([]byte, 2048)
+	file.Read(head)
+	return generatedRe.Match(head)
+}
+
 // todo: use this to check against mime types!
 
 // MimeToKindMapInit makes sure the MimeToKindMap is initialized from
@@ -316,7 +330,7 @@ var StandardMimes = []MimeType{
 	{"text/x-forth", []string{".frt"}, Code, Forth},                       // note: ".fs" conflicts with fsharp
 	{"text/x-fortran", []string{".f", ".F"}, Code, Fortran},
 	{"text/x-fsharp", []string{".fs", ".fsi"}, Code, FSharp},
-	{"text/x-gosrc", []string{".go", ".mod", ".work", ".cosh"}, Code, Go},
+	{"text/x-gosrc", []string{".go", ".mod", ".work", ".goal"}, Code, Go},
 	{"text/x-haskell", []string{".hs", ".lhs"}, Code, Haskell},
 	{"text/x-literate-haskell", nil, Code, Haskell}, // todo: not sure if same or not
 

base/fsx/fsx.go

@@ -17,6 +17,10 @@ import (
 	"time"
 )
 
+// Filename is used to open a file picker dialog when used as an argument
+// type in a function, or as a field value.
+type Filename string
+
 // GoSrcDir tries to locate dir in GOPATH/src/ or GOROOT/src/pkg/ and returns its
 // full path. GOPATH may contain a list of paths. From Robin Elkind github.com/mewkiz/pkg.
 func GoSrcDir(dir string) (absDir string, err error) {

base/generate/generate.go

@@ -54,16 +54,28 @@ func PrintHeader(w io.Writer, pkg string, imports ...string) {
 	}
 }
 
-// Inspect goes through all of the files in the given package
-// and calls the given function on each node in files that
-// are not generated. The bool return value from the given function
+// ExcludeFile returns true if the given file is on the exclude list.
+func ExcludeFile(pkg *packages.Package, file *ast.File, exclude ...string) bool {
+	fpos := pkg.Fset.Position(file.FileStart)
+	_, fname := filepath.Split(fpos.Filename)
+	for _, ex := range exclude {
+		if fname == ex {
+			return true
+		}
+	}
+	return false
+}
+
+// Inspect goes through all of the files in the given package,
+// except those listed in the exclude list, and calls the given
+// function on each node. The bool return value from the given function
 // indicates whether to continue traversing down the AST tree
 // of that node and look at its children. If a non-nil error value
 // is returned by the given function, the traversal of the tree is
 // stopped and the error value is returned.
-func Inspect(pkg *packages.Package, f func(n ast.Node) (bool, error)) error {
+func Inspect(pkg *packages.Package, f func(n ast.Node) (bool, error), exclude ...string) error {
 	for _, file := range pkg.Syntax {
-		if ast.IsGenerated(file) {
+		if ExcludeFile(pkg, file, exclude...) {
 			continue
 		}
 		var terr error

base/iox/imagex/testing.go

@@ -12,6 +12,8 @@ import (
 	"os"
 	"path/filepath"
 	"strings"
+
+	"cogentcore.org/core/base/num"
 )
 
 // TestingT is an interface wrapper around *testing.T
@@ -56,6 +58,25 @@ func CompareColors(cc, ic color.RGBA, tol int) bool {
 	return true
 }
 
+// DiffImage returns the difference between two images,
+// with pixels having the abs of the difference between pixels.
+func DiffImage(a, b image.Image) image.Image {
+	ab := a.Bounds()
+	di := image.NewRGBA(ab)
+	for y := ab.Min.Y; y < ab.Max.Y; y++ {
+		for x := ab.Min.X; x < ab.Max.X; x++ {
+			cc := color.RGBAModel.Convert(a.At(x, y)).(color.RGBA)
+			ic := color.RGBAModel.Convert(b.At(x, y)).(color.RGBA)
+			r := uint8(num.Abs(int(cc.R) - int(ic.R)))
+			g := uint8(num.Abs(int(cc.G) - int(ic.G)))
+			b := uint8(num.Abs(int(cc.B) - int(ic.B)))
+			c := color.RGBA{r, g, b, 255}
+			di.Set(x, y, c)
+		}
+	}
+	return di
+}
+
 // Assert asserts that the given image is equivalent
 // to the image stored at the given filename in the testdata directory,
 // with ".png" added to the filename if there is no extension
@@ -77,6 +98,7 @@ func Assert(t TestingT, img image.Image, filename string) {
 
 	ext := filepath.Ext(filename)
 	failFilename := strings.TrimSuffix(filename, ext) + ".fail" + ext
+	diffFilename := strings.TrimSuffix(filename, ext) + ".diff" + ext
 
 	if UpdateTestImages {
 		err := Save(img, filename)
@@ -87,6 +109,7 @@ func Assert(t TestingT, img image.Image, filename string) {
 		if err != nil {
 			t.Errorf("AssertImage: error removing old fail image: %v", err)
 		}
+		os.RemoveAll(diffFilename)
 		return
 	}
 
@@ -133,10 +156,15 @@ func Assert(t TestingT, img image.Image, filename string) {
 		if err != nil {
 			t.Errorf("AssertImage: error saving fail image: %v", err)
 		}
+		err = Save(DiffImage(img, fimg), diffFilename)
+		if err != nil {
+			t.Errorf("AssertImage: error saving diff image: %v", err)
+		}
 	} else {
 		err := os.RemoveAll(failFilename)
 		if err != nil {
 			t.Errorf("AssertImage: error removing old fail image: %v", err)
 		}
+		os.RemoveAll(diffFilename)
 	}
 }

base/keylist/README.md

@@ -0,0 +1,6 @@
+# keylist
+
+keylist implements an ordered list (slice) of items (Values), with a map from a Key (e.g., names) to indexes, to support fast lookup by name.  There is also a Keys slice.
+
+This is a different implementation of the [ordmap](../ordmap) package, and has the advantage of direct slice access to the values, instead of having to go through the KeyValue tuple struct in ordmap.
+