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New public study: CNF Serra NFOSI #1982

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@anngvu anngvu commented Dec 15, 2023

What?

Close #1980.

Cancer studies updated in this pull request:
Add CNF-related study from Serra lab.

checks

For all pull requests:

  • Passes validation

For a new study (in addition to above):

  • Does study name and study ID follow our convention? e.g. Tumor_Type (Institue, Journal Year); brca_mskcc_2015
  • is study meta data complete? e.g. pmid, group of PUBLIC
  • were all samples profiled with WES/WGS? If not, is gene panel file curated?
  • are oncotree codes of all samples curated; Cancer Type and Cancer Type Detailed needs to be added in addition to Oncotree Code
  • clinical sample and patient data with meta files
  • mutations data with meta files
  • Expression data including z-scores with meta files
  • Case-lists for all profiles.
  • Manual checking (Niki or JJ): Triage or private Portal link here

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anngvu commented Dec 15, 2023

OK, this was validated before submitting and I see that the CircleCI check is failing for another study:

====List of error studies:====

/home/circleci/test-reports/public/gbm_cptac_2021/gbm_cptac_2021-validation.html /home/circleci/test-reports/public/paad_cptac_2021/paad_cptac_2021-validation.html

@anngvu anngvu changed the title New study/serra cnf nfosi New public study: CNF Serra NFOSI Dec 16, 2023
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anngvu commented Dec 16, 2023

Merged fix from master -> updated tests OK.

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anngvu commented Dec 19, 2023

@ritikakundra This is a small and easy dataset. Hopefully I can ask a favor to have you take a look, though it looks like you guys are super busy.

@anngvu anngvu closed this May 22, 2024
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New study for Cutaneous Neurofibroma (Edu Serra lab)
1 participant