Add intronic APC events to Yaeger et al, 2018

[inodb]

Fix genome-nexus/genome-nexus#666. The intronic/splice APC have been reannotated using genome nexus' reVUE integration updating these to p.G279Ffs*10 Frame_Shift_Ins. See also figure from paper:

Cancer studies updated in this pull request:

• crc_msk_2017

APC mutations go from:

to:

Example mutations diagram:

Review

• We noticed that this section of the manuscript mentions:

  Notably, we identified 35 MSS cases harboring a recurrent intronic single-nucleotide variant eight nucleotides upstream of APC exon 9 (chr5:112151184A>G; NM_000038)

  We found an additional sample P-0004865-T01-IM5 with that event (i.e. 36 MSS cases instead of 35). To be consistent with the paper we removed that event

Related PRs

• We updated the VUE data to replace the protein change in this PR: Add VUEs from Yaeger et al paper genome-nexus/genome-nexus#667

Checks

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• Passes validation