v2.1.33.17

What's Changed

new features or functionality

• extend beast task and workflow to glob and output *.ops, *.rates, and *.root files by @tomkinsc in #478
• Subsampler and augur workflow by @dpark01 in #483

bug fixes and small changes

• syntax bugfixes by @dpark01 in #462
• tweaks to demux_only and demux_metag by @dpark01 in #464
• omit --dirs from the MultiQC invocation to only show sample names in report by @tomkinsc in #467
• hotfix for bug in output path by @dpark01 in #480
• sc2 nextstrain: reduce temp file sizes by @dpark01 in #484
• Fetch_SRA_to_BAM - tolerate no isolate defined by @dpark01 in #489
• Update genbank.WDL so author_list input is optional by @tomkinsc in #473

documentation updates

• Enhancing documentation for viral-pipelines by @golu099 in #461
• move transposed parameter_meta block outside command block scope to where it belongs by @tomkinsc in #477
• Update LICENSE copyright year by @tomkinsc in #476

parameterization and default VM shapes

• de novo assembly & scaffold mem default 31 -> 63 GB by @tomkinsc in #465
• parameterize disk size for illumina_demux task by @tomkinsc in #470
• max_records_in_ram param 2000000 -> 10000000 for Nova S2 by @tomkinsc in #468

upstream docker tags / version dependencies

• bump pangolin by @dpark01 in #482

build updates and fixes

• delete the .travis directory by @tomkinsc in #448
• dnanexus CI build fixes by @dpark01 in #485 #486 #487 #488
• GitHub actions update by @tomkinsc in #474

Full Changelog: v2.1.33.16...v2.1.33.17