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Enhancing documentation for viral-pipelines #461

Merged
merged 51 commits into from
Jul 19, 2023
Merged

Enhancing documentation for viral-pipelines #461

merged 51 commits into from
Jul 19, 2023

Commits on Mar 2, 2023

  1. Adding traning workflow wdl and changing workflows.rst to add demux_d… 

    …eplete and classify_single
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  2. modifying 16S-trian_classifier.wdl

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    golu099 committed Mar 2, 2023
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  3. addressing same call issue

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    golu099 committed Mar 2, 2023
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  4. fixing bug issue

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    golu099 committed Mar 2, 2023
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  5. 16S train classifier bugs

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    golu099 committed Mar 2, 2023
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  6. tax ref bug

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  7. tax debug

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Commits on Mar 23, 2023

  1. Description meta

    @golu099
    golu099 committed Mar 23, 2023
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Commits on Mar 30, 2023

  1. Fixes with task_assembly

    @golu099
    golu099 committed Mar 30, 2023
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  2. bug fixes in assembly task

    @golu099
    golu099 committed Mar 30, 2023
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  3. bug fixes in assembly task

    @golu099
    golu099 committed Mar 30, 2023
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  4. bug fixes in assembly task

    @golu099
    golu099 committed Mar 30, 2023
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  5. Addressing line 21

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  6. addressing bug fixes for task assembly

    @golu099
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  7. addressing bug fixes for task assembly

    @golu099
    golu099 committed Mar 30, 2023
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  8. addressing line 71

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Commits on Apr 5, 2023

  1. Adding documentation to demux_deplete

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    golu099 committed Apr 5, 2023
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  2. fixing comma issue in task_report

    @golu099
    golu099 committed Apr 5, 2023
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Commits on Apr 6, 2023

  1. Addressing commas

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    golu099 committed Apr 6, 2023
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  2. Addressing commas

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    golu099 committed Apr 6, 2023
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  3. Removing novalaign license

    @golu099
    golu099 committed Apr 6, 2023
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Commits on Apr 13, 2023

  1. Merge branch 'master' into fnegrete_test

    @dpark01
    dpark01 committed Apr 13, 2023
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  2. Update docs/workflows.rst 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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    golu099 and dpark01 committed Apr 13, 2023
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Commits on Apr 20, 2023

  1. Removing .vscode files from git

    @golu099
    golu099 committed Apr 20, 2023
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Commits on Apr 26, 2023

  1. changing dockstore.yml

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  2. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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    golu099 and dpark01 committed Apr 26, 2023
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  3. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  4. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  5. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  6. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  7. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  8. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  9. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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    golu099 and dpark01 committed Apr 26, 2023
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  10. Update pipes/WDL/workflows/demux_deplete.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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    golu099 and dpark01 committed Apr 26, 2023
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Commits on Apr 27, 2023

  1. chaning the memory storage

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  2. chaning memory storage for amplicon wdl

    @golu099
    golu099 committed Apr 27, 2023
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  3. Merge branch 'fnegrete_test' of https://github.com/broadinstitute/vir… 

    …al-pipelines into fnegrete_test
    @golu099
    golu099 committed Apr 27, 2023
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Commits on May 2, 2023

  1. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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    golu099 and dpark01 committed May 2, 2023
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  2. Update pipes/WDL/tasks/tasks_16S_amplicon.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  3. Update pipes/WDL/tasks/tasks_16S_amplicon.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  4. Update pipes/WDL/tasks/tasks_16S_amplicon.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  5. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  6. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  7. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  8. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  9. Update pipes/WDL/tasks/tasks_assembly.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  10. Update pipes/WDL/tasks/tasks_16S_amplicon.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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  11. Update pipes/WDL/tasks/tasks_16S_amplicon.wdl 

    Co-authored-by: Daniel Park <dpark@broadinstitute.org>
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Commits on May 11, 2023

  1. Merge branch 'master' into fnegrete_test

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Commits on May 19, 2023

  1. Merge branch 'master' into fnegrete_test

    @tomkinsc
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Commits on Jul 19, 2023

  1. Merge branch 'master' into fnegrete_test

    @tomkinsc
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