Temporarily swap in Corretto for Temurin as we can't download Temurin. (

#7969)

.dockstore.yml

@@ -220,8 +220,7 @@ workflows:
        branches:
          - master
          - ah_var_store
-         - rsa_metadata_from_python
-         - gg_VS-492_BetaUserJarRelease
+         - mc_debug_temurin_issues
    - name: GvsIngestTieout
      subclass: WDL
      primaryDescriptorPath: /scripts/variantstore/wdl/GvsIngestTieout.wdl

scripts/variantstore/wdl/GvsUtils.wdl

@@ -254,18 +254,25 @@ task BuildGATKJarAndCreateDataset {
 
   command <<<
     # Much of this could/should be put into a Docker image.
-    set -o errexit -o nounset -o pipefail
+    set -o errexit -o nounset -o pipefail -o xtrace
 
     # git and git-lfs
     apt-get -qq update
     apt-get -qq install git git-lfs
 
-    # Java
-    apt-get -qq install wget apt-transport-https gnupg
-    wget -O - https://packages.adoptium.net/artifactory/api/gpg/key/public | apt-key add -
-    echo "deb https://packages.adoptium.net/artifactory/deb $(awk -F= '/^VERSION_CODENAME/{print$2}' /etc/os-release) main" | tee /etc/apt/sources.list.d/adoptium.list
+    # Temurin Java 11
+    # apt-get -qq install wget apt-transport-https gnupg
+    # wget -O - https://packages.adoptium.net/artifactory/api/gpg/key/public | apt-key add -
+    # echo "deb https://packages.adoptium.net/artifactory/deb $(awk -F= '/^VERSION_CODENAME/{print$2}' /etc/os-release) main" | tee /etc/apt/sources.list.d/adoptium.list
+    # apt-get -qq --fix-missing update
+    # apt -qq install -y temurin-11-jdk
+
+    # Corretto Java 11
+    apt-get -qq install wget apt-transport-https gnupg software-properties-common
+    wget -O- https://apt.corretto.aws/corretto.key | apt-key add -
+    add-apt-repository 'deb https://apt.corretto.aws stable main'
     apt-get -qq update
-    apt -qq install -y temurin-11-jdk
+    apt-get install -y java-11-amazon-corretto-jdk
 
     # GATK
     git clone https://github.com/broadinstitute/gatk.git --depth 1 --branch ~{branch_name} --single-branch