fixed a typo

broadinstitute · Feb 12, 2019 · dcbb452 · dcbb452
1 parent 7b14366
commit dcbb452
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...dinstitute/hellbender/tools/spark/transforms/markduplicates/MarkDuplicatesSparkUtils.java b/...dinstitute/hellbender/tools/spark/transforms/markduplicates/MarkDuplicatesSparkUtils.java
@@ -409,7 +409,7 @@ static JavaPairRDD<String, GATKDuplicationMetrics> generateMetrics(final SAMFile
                     if (read.getTransientAttribute(OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME)!=null) {
                         // NOTE: there is a safety check above in getReadsGroupedByName()
                         metrics.READ_PAIR_OPTICAL_DUPLICATES +=
-                                (int)(read.getTransientAttribute(OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME);
+                                (int)(read.getTransientAttribute(OPTICAL_DUPLICATE_TOTAL_ATTRIBUTE_NAME));
                     }
                     return new Tuple2<>(library, metrics);
                 })