Update to latest version of ah_var_store gatk override jar (#7793)

broadinstitute · Apr 20, 2022 · 8d08a6e · 8d08a6e
1 parent 940777c
commit 8d08a6e
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/scripts/variantstore/wdl/GvsCreateFilterSet.wdl b/scripts/variantstore/wdl/GvsCreateFilterSet.wdl
@@ -14,7 +14,7 @@ workflow GvsCreateFilterSet {
     Array[String] snp_recalibration_annotation_values = ["AS_QD", "AS_MQRankSum", "AS_ReadPosRankSum", "AS_FS", "AS_MQ", "AS_SOR"]
 
     File interval_list = "gs://gcp-public-data--broad-references/hg38/v0/wgs_calling_regions.hg38.noCentromeres.noTelomeres.interval_list"
-    File gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20220406/gatk-package-4.2.0.0-480-gb62026a-SNAPSHOT-local.jar"
+    File gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20220415/gatk-package-4.2.0.0-492-g1387d47-SNAPSHOT-local.jar"
 
     Int? INDEL_VQSR_max_gaussians_override = 4
     Int? INDEL_VQSR_mem_gb_override

diff --git a/scripts/variantstore/wdl/GvsImportGenomes.wdl b/scripts/variantstore/wdl/GvsImportGenomes.wdl
@@ -13,7 +13,7 @@ workflow GvsImportGenomes {
     File interval_list = "gs://gcp-public-data--broad-references/hg38/v0/wgs_calling_regions.hg38.noCentromeres.noTelomeres.interval_list"
     Int? load_data_preemptible_override
     Int? load_data_maxretries_override
-    File? load_data_gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20220406/gatk-package-4.2.0.0-480-gb62026a-SNAPSHOT-local.jar"
+    File? load_data_gatk_override = "gs://broad-dsp-spec-ops/scratch/bigquery-jointcalling/jars/ah_var_store_20220415/gatk-package-4.2.0.0-492-g1387d47-SNAPSHOT-local.jar"
     String? service_account_json_path
   }