Skip to content

Issues: biolink/ontobio

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

115 Open 114 Closed
115 Open 114 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

problems parsing output from latest obographs library
#697 opened Nov 1, 2024 by balhoff
@sierra-moxon
1
Current version of ontobio, in some cases, has trouble parsing GAF(?) bug
#689 opened Aug 21, 2024 by kltm
1
@dustine32 @sierra-moxon
1
ontobio is not HTTPS-safe bug
#688 opened Aug 20, 2024 by kltm
1
ontobio pull request failing workflow actions due to Monarch
#671 opened Mar 26, 2024 by mugitty
1
sqlite3.DatabaseError: file is not a database
#652 opened Oct 17, 2023 by AITCM
enrichment_test() function not returning anything
#628 opened Aug 24, 2022 by kcortes133
EcoMap should parse eco.owl as ontology enhancement
#624 opened May 11, 2022 by dustine32
1
"category" field in Token should be "categories"
#615 opened Mar 1, 2022 by falquaddoomi
Cannot render subgraphs using GraphRenderer
#612 opened Jan 27, 2022 by remerjohnson
ontobio output to obograph?
#608 opened Dec 2, 2021 by dosumis
loading local json files fails
#607 opened Dec 1, 2021 by dosumis
1
ogr bug?
#606 opened Dec 1, 2021 by dosumis
1
ModuleNotFoundError: No module named ‘ontobio.graph_io'
#597 opened Nov 1, 2021 by realmarcin
get_minimal_subgraph gives "RecursionError: maximum recursion depth exceeded"
#596 opened Oct 20, 2021 by realmarcin
What does this repo do? Please improve the readme
#586 opened Sep 9, 2021 by cthoyt
Run GO rule 20 (obsolete term repair) before GO rule 28 (term aspect check)
#576 opened Jun 15, 2021 by dustine32
@dustine32
2
There should be a way to exclude some GO rules when parsing a GAF file
#544 opened Mar 26, 2021 by valearna
@dougli1sqrd
6
generate reports on differences in two gpad2.0 files
#540 opened Mar 17, 2021 by sierra-moxon
2 tasks
@sierra-moxon
5
synonym parsing skips synonyms with xsd:string declared
#534 opened Mar 4, 2021 by goodb
2
Test notebooks along side the usual suite of tests
#520 opened Feb 9, 2021 by deepakunni3
Fix filepaths for resources in tests
#519 opened Feb 9, 2021 by deepakunni3
Separate out unit and integration tests
#518 opened Feb 9, 2021 by deepakunni3
1
Use behind proxy
#516 opened Feb 8, 2021 by BenoitTS
2
GPI 2.0 support with GPAD 2.0
#511 opened Jan 27, 2021 by dougli1sqrd
@dougli1sqrd
handling multiple rdfs labels
#510 opened Jan 27, 2021 by goodb
ProTip! Add no:assignee to see everything that’s not assigned.