Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

FMA identifiers don't resolve #1458

Open
cbizon opened this issue Feb 21, 2024 · 1 comment
Open

FMA identifiers don't resolve #1458

cbizon opened this issue Feb 21, 2024 · 1 comment
Labels
bug identifiers Used to group tickets around prefix management and identifier mappings

Comments

@cbizon
Copy link
Collaborator

cbizon commented Feb 21, 2024

There are many mappings from biolink predicates to FMA terms. They mostly look like readable identifiers.

FMA:connected_to
FMA:continuous_with
FMA:homonym_of

Using the expansion in biolink_model_prefix_map.json, these get expanded to things like:
http://purl.obolibrary.org/obo/FMA_connected_to

But these IRIs don't resolve.

Interestingly, FMA has these relationships in its class structure rather than as properties, and they have the normal kind of numerical identifiers. e.g. the first relation there should be replaced with:
http://purl.obolibrary.org/obo/FMA_62802 "connected_to relation"

@cmungall
Copy link
Collaborator

cmungall commented Feb 22, 2024 via email

@nlharris nlharris added identifiers Used to group tickets around prefix management and identifier mappings bug labels Feb 23, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug identifiers Used to group tickets around prefix management and identifier mappings
Projects
None yet
Development

No branches or pull requests

3 participants