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[FIX] Clarify that EDF/BDF files MUST have lower case extensions in BIDS #927

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merged 9 commits into from
Nov 17, 2021
Merged

[FIX] Clarify that EDF/BDF files MUST have lower case extensions in BIDS #927

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ec6344b
Fix EDF spec
adam2392 Nov 12, 2021
6092e7e
drop latin, use 'lower case' without dash -
sappelhoff Nov 12, 2021
d07290f
Update src/04-modality-specific-files/03-electroencephalography.md
adam2392 Nov 12, 2021
c24b3e4
Convert to table
adam2392 Nov 12, 2021
04a6a19
Format table
adam2392 Nov 12, 2021
3bc9392
add missing dots
sappelhoff Nov 14, 2021
f785ec3
add missing code formatting, one consistency fix
sappelhoff Nov 14, 2021
3f59012
Fix reviews
adam2392 Nov 15, 2021
e1394c6
STY: Fix typo, table fences
effigies Nov 15, 2021
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19 changes: 6 additions & 13 deletions src/04-modality-specific-files/03-electroencephalography.md
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Original file line number Diff line number Diff line change
Expand Up @@ -18,19 +18,12 @@ The EEG community uses a variety of formats for storing raw data, and there is
no single standard that all researchers agree on. For BIDS, EEG data MUST be
stored in one of the following formats:

- [European data format](https://www.edfplus.info/)
(including [`edf+`](https://www.edfplus.info/specs/edfplus.html);
each recording consisting of a `.edf` file)

- [BrainVision Core Data Format](https://www.brainproducts.com/productdetails.php?id=21&tab=5)
(Each recording consisting of a `.vhdr`, `.vmrk`, `.eeg` file triplet)

- The format used by the MATLAB toolbox [EEGLAB](https://sccn.ucsd.edu/eeglab)
(Each recording consisting of a `.set` file with an optional `.fdt` file)

- [Biosemi](https://www.biosemi.com/) data format
(including [`bdf+`](https://www.teuniz.net/edfbrowser/bdfplus%20format%20description.html);
each recording consisting of a `.bdf` file)
| **Format** | **Extension(s)** | **Description** |
| -------------------------------------------------------------------------------------------- | ------------------------ | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| [European data format](https://www.edfplus.info/) | `.edf` | Each recording consists of a single `.edf` file. [`edf+`](https://www.edfplus.info/specs/edfplus.html) files are permitted. The capital `.EDF` extension MUST NOT be used. |
| [BrainVision Core Data Format](https://www.brainproducts.com/productdetails.php?id=21&tab=5) | `.vhdr`, `.vmrk`, `.eeg` | Each recording consists of a `.vhdr`, `.vmrk`, `.eeg` file triplet. |
| [EEGLAB](https://sccn.ucsd.edu/eeglab) | `.set`, `.fdt` | The format used by the MATLAB toolbox [EEGLAB](https://sccn.ucsd.edu/eeglab). Each recording consists of a `.set` file with an optional `.fdt` file. |
| [Biosemi](https://www.biosemi.com/) | `.bdf` | Each recording consists of a single `.bdf` file. [`bdf+`](https://www.teuniz.net/edfbrowser/bdfplus%20format%20description.html) files are permitted. The capital `.BDF` extension MUST NOT be used. |

It is RECOMMENDED to use the European data format, or the BrainVision data
format. It is furthermore discouraged to use the other accepted formats over
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22 changes: 7 additions & 15 deletions src/04-modality-specific-files/04-intracranial-electroencephalography.md
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Expand Up @@ -18,21 +18,13 @@ The iEEG community uses a variety of formats for storing raw data, and there is
no single standard that all researchers agree on. For BIDS, iEEG data MUST be
stored in one of the following formats:

- [European data format](https://www.edfplus.info/)
(including [`edf+`](https://www.edfplus.info/specs/edfplus.html);
each recording consisting of a `.edf` file)

- [BrainVision Core Data Format](https://www.brainproducts.com/productdetails.php?id=21&tab=5)
(Each recording consisting of a `.vhdr`, `.vmrk`, `.eeg` file triplet)

- The format used by the MATLAB toolbox [EEGLAB](https://sccn.ucsd.edu/eeglab)
(Each recording consisting of a `.set` file with an optional `.fdt` file)

- [Neurodata Without Borders](https://nwb-schema.readthedocs.io)
(Each recording consisting of a `.nwb` file)

- [MEF3](https://msel.mayo.edu/files/codes/MEF%203%20Specification.pdf)
(Each recording consisting of a `.mefd` directory)
| **Format** | **Extension(s)** | **Description** |
| -------------------------------------------------------------------------------------------- | ------------------------ | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
| [European data format](https://www.edfplus.info/) | `.edf` | Each recording consists of a `.edf` single file. [`edf+`](https://www.edfplus.info/specs/edfplus.html) files are permitted. The capital `.EDF` extension MUST NOT be used. |
| [BrainVision Core Data Format](https://www.brainproducts.com/productdetails.php?id=21&tab=5) | `.vhdr`, `.vmrk`, `.eeg` | Each recording consists of a `.vhdr`, `.vmrk`, `.eeg` file triplet. |
| [EEGLAB](https://sccn.ucsd.edu/eeglab) | `.set`, `.fdt` | The format used by the MATLAB toolbox [EEGLAB](https://sccn.ucsd.edu/eeglab). Each recording consists of a `.set` file with an optional `.fdt` file. |
| [Neurodata Without Borders](https://nwb-schema.readthedocs.io) | `.nwb` | Each recording consists of a single `.nwb` file. |
| [MEF3](https://msel.mayo.edu/files/codes/MEF%203%20Specification.pdf) | `.mefd` | Each recording consists of a `.mefd` directory. |

It is RECOMMENDED to use the European data format, or the BrainVision data
format. It is furthermore discouraged to use the other accepted formats over
Expand Down