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Add ref to arxiv paper #80

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Mar 10, 2023
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4 changes: 2 additions & 2 deletions .github/workflows/run-tox.yml
Original file line number Diff line number Diff line change
Expand Up @@ -15,11 +15,11 @@ jobs:
python-version: ["3.8", "3.9", "3.10"]

steps:
- uses: actions/checkout@v2
- uses: actions/checkout@v3
with:
submodules: 'true'
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v2
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
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9 changes: 8 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -122,7 +122,14 @@ We are always on the look out for individuals that are interested in contributin
Please cite our paper if you use this code in your own work:

```
preprint incoming...
@article{pygenstability,
author = {Arnaudon, Alexis and Schindler, Dominik J. and Peach, Robert L. and Gosztolai, Adam and Hodges, Maxwell and Schaub, Michael T. and Barahona, Mauricio},
title = {PyGenStability: Multiscale community detection with generalized Markov Stability},
publisher = {arXiv},
year = {2023},
doi = {10.48550/ARXIV.2303.05385},
url = {https://arxiv.org/abs/2303.05385}
}
```

The original paper for Markov Stability can also be cited as:
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9 changes: 8 additions & 1 deletion docs/index_readme.md
Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,14 @@ We are always on the look out for individuals that are interested in contributin
Please cite our paper if you use this code in your own work:

```
preprint incoming...
@article{pygenstability,
author = {Arnaudon, Alexis and Schindler, Dominik J. and Peach, Robert L. and Gosztolai, Adam and Hodges, Maxwell and Schaub, Michael T. and Barahona, Mauricio},
title = {PyGenStability: Multiscale community detection with generalized Markov Stability},
publisher = {arXiv},
year = {2023},
doi = {10.48550/ARXIV.2303.05385},
url = {https://arxiv.org/abs/2303.05385}
}
```

The original paper for Markov Stability can also be cited as:
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1 change: 1 addition & 0 deletions tests/test_constructors.py
Original file line number Diff line number Diff line change
Expand Up @@ -85,6 +85,7 @@ def test_spectral_exp(graph):
constructors.load_constructor(constr, graph, exp_comp_mode="spectral").get_data(1)
)
expected_data = yaml.safe_load(open(DATA / f"test_constructor_{constr}.yaml", "r"))
print(constr)
assert_almost_equal(data["quality"], expected_data["quality"])
assert_almost_equal(data["null_model"], expected_data["null_model"])

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2 changes: 1 addition & 1 deletion tox.ini
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@ setenv =
COVERAGE_FILE = {env:COVERAGE_FILE:.coverage-{envname}}
deps = pybind11
extras = all
commands = pytest \
commands = pytest -s \
--basetemp={envtmpdir} \
--cov={[base]name} \
--cov-fail-under=100
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