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Remove alt at JQs recommendation
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@BioWilko
BioWilko committed Mar 29, 2022
1 parent 509eae6 commit 5630611
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Showing 4 changed files with 4 additions and 8 deletions.
3 changes: 1 addition & 2 deletions nCoV-2019/V4.1/SARS-CoV-2.primer.bed
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Original file line number Diff line number Diff line change
Expand Up @@ -127,8 +127,7 @@ MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 + GTGACACACTTAAAAATCTCTCTGACAG
MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT 1 - GCTCAGGTCCTATTTTCACAAAATACTT
MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 + TAGGTGTCTAGCTGTCCACGAG
MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 - CCGCATTAATCTTCAGTTCATCACC
MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 + GCCTATTTTGGAATTGCAATGTCGA
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT_alt1 2 + GCCTATTTTGGAATTGCAATGTCGAGGGGTGTCATGCTA
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT 2 + GCCTATTTTGGAATTGCAATGTCGA
MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 - CCAGGCAAGTTAAGGTTAGATAGCA
MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 + GTCTGTAGACATCATGCTAATGAGTACA
MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 - GTATCAAATTGTTTGTAAACCCACAAGC
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3 changes: 1 addition & 2 deletions nCoV-2019/V4.1/SARS-CoV-2.scheme.bed
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Original file line number Diff line number Diff line change
Expand Up @@ -127,8 +127,7 @@ MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 +
MN908947.3 18624 18652 SARS-CoV-2_61_RIGHT 1 -
MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 +
MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 -
MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 +
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT_alt1 2 +
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT 2 +
MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 -
MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 +
MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 -
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3 changes: 1 addition & 2 deletions nCoV-2019/V4/SARS-CoV-2.primer.bed
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Original file line number Diff line number Diff line change
Expand Up @@ -124,8 +124,7 @@ MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 + GTGACACACTTAAAAATCTCTCTGACAG
MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 - CCGCATTAATCTTCAGTTCATCACC
MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 + TAGGTGTCTAGCTGTCCACGAG
MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 - CCAGGCAAGTTAAGGTTAGATAGCA
MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 + GCCTATTTTGGAATTGCAATGTCGA
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT_alt1 2 + GCCTATTTTGGAATTGCAATGTCGAGGGGTGTCATGCTA
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT 2 + GCCTATTTTGGAATTGCAATGTCGA
MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 - GTATCAAATTGTTTGTAAACCCACAAGC
MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 + GTCTGTAGACATCATGCTAATGAGTACA
MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT 1 - GCTGGAGCATCTCTTTTGTAGTCC
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3 changes: 1 addition & 2 deletions nCoV-2019/V4/SARS-CoV-2.scheme.bed
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Original file line number Diff line number Diff line change
Expand Up @@ -124,8 +124,7 @@ MN908947.3 18550 18578 SARS-CoV-2_62_LEFT 2 +
MN908947.3 18936 18961 SARS-CoV-2_62_RIGHT 2 -
MN908947.3 18869 18891 SARS-CoV-2_63_LEFT 1 +
MN908947.3 19252 19277 SARS-CoV-2_63_RIGHT 1 -
MN908947.3 19183 19208 SARS-CoV-2_64_LEFT 2 +
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT_alt1 2 +
MN908947.3 19183 19222 SARS-CoV-2_64_LEFT 2 +
MN908947.3 19558 19586 SARS-CoV-2_64_RIGHT 2 -
MN908947.3 19485 19513 SARS-CoV-2_65_LEFT 1 +
MN908947.3 19877 19901 SARS-CoV-2_65_RIGHT 1 -
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