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@artic-network

ARTICnetwork

This is the ARTICnetwork project, a Wellcome Trust funded project to provide a system for real-time genomic epidemiology of virus outbreaks.

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  1. artic-ncov2019 artic-ncov2019 Public

    ARTIC nanopore protocol for nCoV2019 novel coronavirus

    Python 168 165

  2. fieldbioinformatics fieldbioinformatics Public

    Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    Python 117 67

  3. rampart rampart Public

    Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

    JavaScript 79 33

  4. civet civet Public

    Cluster Investigation & Virus Epidemiology Tool

    Python 49 14

  5. primer-schemes primer-schemes Public

    Primer schemes for real-time genome epidemiology

    Python 27 42

  6. readucks readucks Public

    Nanopore read de-multiplexer

    Python 13 3

Repositories

Showing 10 of 34 repositories
  • primalscheme3 Public

    Primalscheme3. Generation of highly multiplex primerschemes

    artic-network/primalscheme3’s past year of commit activity
    Python 5 GPL-3.0 1 1 0 Updated Dec 23, 2024
  • bed2idt Public

    Convert bedfiles to IDT custom spreadsheets

    artic-network/bed2idt’s past year of commit activity
    Python 0 CC-BY-SA-4.0 0 0 0 Updated Dec 20, 2024
  • primalpooling Public

    Collection of Scripts for the OT2 for pooling primers

    artic-network/primalpooling’s past year of commit activity
    Python 0 0 0 0 Updated Dec 20, 2024
  • primal-page Public
    artic-network/primal-page’s past year of commit activity
    HTML 2 0 0 0 Updated Dec 20, 2024
  • fieldbioinformatics Public Forked from zibraproject/zika-pipeline

    The ARTIC field bioinformatics pipeline

    artic-network/fieldbioinformatics’s past year of commit activity
    Python 117 MIT 88 1 4 Updated Dec 18, 2024
  • website Public
    artic-network/website’s past year of commit activity
    HTML 2 6 0 1 Updated Dec 12, 2024
  • artic-mpxv-nf Public Forked from epi2me-labs/wf-artic

    ARTIC Epi2me compatible workflow and reporting

    artic-network/artic-mpxv-nf’s past year of commit activity
    Nextflow 3 36 0 1 Updated Dec 10, 2024
  • scylla Public

    single sample processing

    artic-network/scylla’s past year of commit activity
    Python 4 GPL-3.0 4 7 0 Updated Dec 9, 2024
  • artic-mpxv-illumina-nf Public Forked from BCCDC-PHL/mpxv-artic-nf
    artic-network/artic-mpxv-illumina-nf’s past year of commit activity
    Python 2 MIT 4 0 0 Updated Nov 21, 2024
  • squirrel-nf Public

    Interactive workflow to run squirrel

    artic-network/squirrel-nf’s past year of commit activity
    Nextflow 0 GPL-3.0 1 1 0 Updated Nov 11, 2024
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