v2.1.0

Added

• Add support for Python 3.9
• Add chrom parameter to SNPs.merge

Updated

• Use set for rsids
• Simplify parsing Ancestry files

v2.0.3

Updated

• Update URL for Ensembl REST API

v2.0.2

Updated

• Make chromosome-based lookups faster
• Use f-strings for string formatting (#100)
• Documentation updates

v2.0.1

Updated

• Support additional Mapmygenome header (#94)

v2.0.0

Added

• Add support for tellmeGen files
• Add SNPs.merge method (#88)
• Remap SNPs as necessary during merge
• Return results for each merge (e.g., SNPs in common)
• Deduplicate MT chromosome alleles (#65)
• Add documentation for normalized snps dataframe
• Identify discrepant SNPs when saving VCF

Updated

• Change minimum supported Python version (#64)
• Change default separator to tab (#66)
• Change default value for assign_par_snps
• Enhance build detection
• Obsolete SNPsCollection object (#88)
• Rename several SNPs methods and properties (#92)
• Refactor normalized snps dataframe with np.uint32 dtype for pos
• Update examples and documentation

v1.2.3

Fixed

• Fix build issues

v1.2.2

Fixed

• Fix issue building docs

v1.2.1

Fixed

• Assign PAR SNPs before deduplicating XY chroms

Updated

• Enhance documentation

v1.2.0

Added

• Add support for parsing a variety of generic files
• Add scripts to parse files in the openSNP datadump

Updated

• Enhance build detection (#6)
• Handle several types of parsing issues
• Handle download exceptions
• Perform minimal downloads during tests
• Refactor classes to files
• Improve tests to read various combinations of inputs

Fixed

• Fixed several minor bugs through added testing

v1.1.1

Fixed

• Fix Travis CI build script