v1.1.0

Added

• Add support for DNA.Land files

v1.0.2

Fixed

• Fix error when saving a VCF with no SNPs (#57)
• Log when no SNPs are loaded (#57)
• Pin version of pandas (#59)

v1.0.1

Fixed

• Handle merged RSIDs when assigning PAR SNPs
• Read tab-separated files generated by snps

v1.0.0

Added

• Add phased property
• Add ability to de-duplicate RSIDs
• Add ability to de-duplicate non-PAR X and Y chromosome alleles for males
• Add openSNP datadump resource
• Add methods to get heterozygous SNPs and not null SNPs
• Add parameter to count SNPs on a chromosome
• Add ability to determine sex using X or Y chromosome methods

Updated

• Update thresholds for determine_sex based on analysis of openSNP data
• Refactor parsing
• Fix NA values for Sano Genetics files

v0.7.0

Added

• Add support for Sano Genetics files

Updated

• Improve reading and parsing of files
• Update resources for Global Screening Array

v0.6.2

Updated

• Refactor exception handling (#38)
• Update documentation

v0.6.1

Updated

• Update CONTRIBUTING.rst
• Update log levels
• Make save_snps parameters consistent

v0.6.0

Added

• Parse large VCF files (optionally compressed with gzip)
• Extract a list of RSIDs from a VCF
• Add SNPs.unannotated_vcf property
• Add documentation for reading VCF (#18)

Updated

• Improve speed of reading VCF files (#11)
• Replace print statements with calls to a logger (#22)
• Do not drop chromosome 0 SNPs
• Install additional dev dependencies with Pipenv
• Fix warnings when generating documentation
• Update tests and documentation

v0.5.0

Added

• Add support for Mapmygenome files
• Add support for Python 3.8

v0.4.0

Added

• Add support for Código 46 files
• Add support for LivingDNA files