Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Basic ancestry functionality #143

Merged
merged 29 commits into from
Oct 22, 2021
Merged

Basic ancestry functionality #143

merged 29 commits into from
Oct 22, 2021

Commits on Jul 6, 2021

  1. Merge pull request apriha#138 from apriha/develop 

    v2.2.0
    @apriha
    apriha committed Jul 6, 2021
    Configuration menu
    Copy the full SHA
    d21dcbe View commit details
    Browse the repository at this point in the history

Commits on Jul 11, 2021

  1. Merge pull request apriha#141 from apriha/develop 

    v2.3.0
    @apriha
    apriha committed Jul 11, 2021
    Configuration menu
    Copy the full SHA
    b3ebe4c View commit details
    Browse the repository at this point in the history

Commits on Sep 21, 2021

  1. Basic ancestry functionality

    @arvkevi
    arvkevi committed Sep 21, 2021
    Configuration menu
    Copy the full SHA
    41d8452 View commit details
    Browse the repository at this point in the history

  2. Black formatting

    @arvkevi
    arvkevi committed Sep 21, 2021
    Configuration menu
    Copy the full SHA
    3ef507f View commit details
    Browse the repository at this point in the history

  3. Black formatting

    @apriha
    apriha committed Sep 21, 2021
    Configuration menu
    Copy the full SHA
    7346acd View commit details
    Browse the repository at this point in the history

  4. Install ezancestry for testing

    @apriha
    apriha committed Sep 21, 2021
    Configuration menu
    Copy the full SHA
    d3fcaad View commit details
    Browse the repository at this point in the history

Commits on Oct 2, 2021

  1. Update pip

    @arvkevi
    arvkevi committed Oct 2, 2021
    Configuration menu
    Copy the full SHA
    dd52e6e View commit details
    Browse the repository at this point in the history

Commits on Oct 4, 2021

  1. Trigger Build

    @arvkevi
    arvkevi committed Oct 4, 2021
    Configuration menu
    Copy the full SHA
    e19e5f0 View commit details
    Browse the repository at this point in the history

Commits on Oct 5, 2021

  1. Test ancestry predictions if ezancestry installed 

    https://stackoverflow.com/a/1051266
    @apriha
    apriha committed Oct 5, 2021
    Configuration menu
    Copy the full SHA
    c4e2e96 View commit details
    Browse the repository at this point in the history

  2. Merge branch 'master' into feature/add_ancestry_predictions

    @apriha
    apriha committed Oct 5, 2021
    Configuration menu
    Copy the full SHA
    c2903da View commit details
    Browse the repository at this point in the history

  3. Add job for testing with extras (e.g., ezancestry)

    @apriha
    apriha committed Oct 5, 2021
    Configuration menu
    Copy the full SHA
    e0bcf52 View commit details
    Browse the repository at this point in the history

Commits on Oct 8, 2021

  1. Update Python packaging tools

    @apriha
    apriha committed Oct 8, 2021
    Configuration menu
    Copy the full SHA
    921c546 View commit details
    Browse the repository at this point in the history

  2. Test extras with Python 3.7

    @apriha
    apriha committed Oct 8, 2021
    Configuration menu
    Copy the full SHA
    54a5e6f View commit details
    Browse the repository at this point in the history

Commits on Oct 9, 2021

  1. Install ezancestry before snps

    @apriha
    apriha committed Oct 9, 2021
    Configuration menu
    Copy the full SHA
    3bbe462 View commit details
    Browse the repository at this point in the history

  2. Ensure snps version can be determined 

    python-versioneer/python-versioneer#206
    @apriha
    apriha committed Oct 9, 2021
    Configuration menu
    Copy the full SHA
    4582b51 View commit details
    Browse the repository at this point in the history

  3. Revert "Install ezancestry before snps" 

    This reverts commit 3bbe462.
    @apriha
    apriha committed Oct 9, 2021
    Configuration menu
    Copy the full SHA
    4e30a99 View commit details
    Browse the repository at this point in the history

Commits on Oct 10, 2021

  1. Run ezancestry to move data files to user's home directory

    @arvkevi
    arvkevi committed Oct 10, 2021
    Configuration menu
    Copy the full SHA
    fc9a5d0 View commit details
    Browse the repository at this point in the history

  2. Valid ezancestry command

    @arvkevi
    arvkevi committed Oct 10, 2021
    Configuration menu
    Copy the full SHA
    92d1dc3 View commit details
    Browse the repository at this point in the history

Commits on Oct 13, 2021

  1. Compute predicted ancestry via property

    @apriha
    apriha committed Oct 13, 2021
    Configuration menu
    Copy the full SHA
    ea36c05 View commit details
    Browse the repository at this point in the history

  2. Handle case when no SNPs are loaded

    @apriha
    apriha committed Oct 13, 2021
    Configuration menu
    Copy the full SHA
    8dc7a0c View commit details
    Browse the repository at this point in the history

  3. Mock ezancestry imports

    @apriha
    apriha committed Oct 13, 2021
    Configuration menu
    Copy the full SHA
    4eadf6e View commit details
    Browse the repository at this point in the history

Commits on Oct 15, 2021

  1. Fix and add ezancestry tests

    @apriha
    apriha committed Oct 15, 2021
    Configuration menu
    Copy the full SHA
    250e417 View commit details
    Browse the repository at this point in the history

  2. Update README

    @apriha
    apriha committed Oct 15, 2021
    Configuration menu
    Copy the full SHA
    fd99424 View commit details
    Browse the repository at this point in the history

Commits on Oct 19, 2021

  1. ezancestry 0.0.6

    @arvkevi
    arvkevi committed Oct 19, 2021
    Configuration menu
    Copy the full SHA
    7ccbdf4 View commit details
    Browse the repository at this point in the history

  2. Update tests for newly trained models

    @apriha
    apriha committed Oct 19, 2021
    Configuration menu
    Copy the full SHA
    92338e1 View commit details
    Browse the repository at this point in the history

  3. Update test-extras job

    @apriha
    apriha committed Oct 19, 2021
    Configuration menu
    Copy the full SHA
    d3c5e91 View commit details
    Browse the repository at this point in the history

  4. Add documentation

    @apriha
    apriha committed Oct 19, 2021
    Configuration menu
    Copy the full SHA
    247df10 View commit details
    Browse the repository at this point in the history

Commits on Oct 22, 2021

  1. Expose parameters to and output from ezancestry

    @apriha
    apriha committed Oct 22, 2021
    Configuration menu
    Copy the full SHA
    1215b72 View commit details
    Browse the repository at this point in the history

  2. Rename method

    @apriha
    apriha committed Oct 22, 2021
    Configuration menu
    Copy the full SHA
    d29743f View commit details
    Browse the repository at this point in the history