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RNA Deep Virome Assemblage

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lukepereira edited this page Mar 29, 2023 · 4 revisions

The RNA Deep Virome Assemblage (RDVA) are versioned releases of the total set of assemblies generated by Serratus. These datasets are immediately released into the public domain (cc0) under the INSDC policy.

Release History

v0.2 (2022-05-14)

  • 3.1 terabytes - s3://lovelywater2/assembly/rdva/rdva_v0.2.fa.lz4 (link)
  • 58,557 libraries; 12,534,144,450 contigs
  • Added "ribozyviria+" datasets from drz0 search.
  • Depleted datasets retracted from SRA in v0.1

v0.1 (2022-05-03)

  • 2.4 terabytes - s3://lovelywater2/assembly/rdva/rdva_v0.1.fa.lz4 (link)
  • 59,256 libraries; 13,453,787,906` contigs
  • Initial release amalgamating Serratus assembly datasets

Citation

If you use the RDVA please cite our preprint:

Extant hybrids of RNA viruses and viroid-like elements
Marco Forgia, Beatriz Navarro, Stefania Daghino, Amelia Cervera, Andreas Gisel, Silvia Perotto, Dilzara N. Aghayeva, Mary Funmilayo Akinyuwa, Emanuela Gobbi, Ivan N. Zheludev, Robert C. Edgar, Rayan Chikhi, Massimo Turina, Artem Babaian, Francesco Di Serio, Marcos de la Peña
bioRxiv 2022.08.21.504695; doi: https://doi.org/10.1101/2022.08.21.504695

In addition, if you perform a focused analysis of an individual dataset, please cite the SRA accession and make a reasonable effort to cite any associated studies.

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Overview

Raw Data

Serratus Explorer (serratus.io)

Usage

Contributing

Work in Progress

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