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Notebook Expository Edits #2

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aaronsheldon opened this issue Apr 14, 2020 · 0 comments
Open

Notebook Expository Edits #2

aaronsheldon opened this issue Apr 14, 2020 · 0 comments
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documentation Improvements or additions to documentation enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed

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aaronsheldon commented Apr 14, 2020 •
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The following work needs to be done on the exposition of the notebook:

  • Grammar, style, and spelling, always.
  • Formally define and reference Makeham processes.
  • Malthusian preamble.
  • Acknowledge Stroustrup, 2018.
  • Discuss relationship between contacts per person day and basic reproduction number.
  • Develop recursive covariance estimates.
  • Clean up examples in methods section.
  • Fix math typos such as flipped signs or spacing of units.
  • Fix covariance estimate to use the law of total covariance.
@aaronsheldon aaronsheldon added documentation Improvements or additions to documentation enhancement New feature or request help wanted Extra attention is needed good first issue Good for newcomers labels Apr 14, 2020
@aaronsheldon aaronsheldon self-assigned this Apr 14, 2020
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Plugging away at #2. Will be for a very long while.
25c72ad
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Hyperlink fix on #2, maybe?
813f40d
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
uggh fixed special characters in hyperlink for #2
2f27851
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
More link fixes for #2. Why!!!??
cc5fdfe
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Wikipedia loves their special characters in hyperlinks, keeps me busy…
cffbcf3 
… with #2
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Possible MathJax conflict? #2
5716d95
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Inline MathJax bug with operatorname command? #2
d7fa083
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
another MathJax test #2
40b0a91
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Try to trick renderer with empty bracket #2
fede6e7
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
GitHub LaTeX breaks badly with operatorname #2
f181201
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Github does not honor operatorname #2
4a8bafb
aaronsheldon added a commit that referenced this issue Apr 15, 2020
@aaronsheldon
Working towards a correct covariance estimate for #2
9dbda64
aaronsheldon added a commit that referenced this issue Apr 16, 2020
@aaronsheldon
To Do: expand recursive variance formula. Part of #2
5cb79d2
aaronsheldon added a commit that referenced this issue Apr 16, 2020
@aaronsheldon
Yup that just happened. I just worked out a correct to all orders sta…
5923152 
…tistical

estimator of the covariances of any Markov process. #2
aaronsheldon added a commit that referenced this issue Apr 17, 2020
@aaronsheldon
Case-ify the covariance derivation for clarity #2, to do work out the…
40ff6ba 
… matrix algebra for implementation
aaronsheldon added a commit that referenced this issue Apr 18, 2020
@aaronsheldon
Add matrix calculation of covariance update. #2
96e8240
aaronsheldon added a commit that referenced this issue Apr 18, 2020
@aaronsheldon
first draft of citation. Need to hook into Zendo #2
83d3ffe
aaronsheldon added a commit that referenced this issue Apr 18, 2020
@aaronsheldon
Clean up and correct stochastic theory #2
3450ed2
aaronsheldon added a commit that referenced this issue Apr 18, 2020
@aaronsheldon
Wrap all math blocks in array #2
71679bf
aaronsheldon added a commit that referenced this issue Apr 18, 2020
@aaronsheldon
Correct step back along age diagonal #2
2069120
aaronsheldon added a commit that referenced this issue Apr 18, 2020
@aaronsheldon
Correct step back on age diagonal #2
ba6385a
aaronsheldon added a commit that referenced this issue Apr 19, 2020
@aaronsheldon
Small clean up for #2 and #5. First commit for #6 and #4
fec96b9
aaronsheldon added a commit that referenced this issue Apr 20, 2020
@aaronsheldon
Modify citation, fix hospitalization #2. Add module for analyzing bas…
4fd2865 
…eline data #3
aaronsheldon added a commit that referenced this issue Apr 20, 2020
@aaronsheldon
Playing my cards now #2
82c7923
aaronsheldon added a commit that referenced this issue Apr 20, 2020
@aaronsheldon
Simple exit strategy #2
10c088d
aaronsheldon added a commit that referenced this issue Apr 22, 2020
@aaronsheldon
To Do: Refactor loop again to calculate covariances
818f27b 
1. probability
2. covariance
3. cohort
4. age
Investigate creating dedicated population type for initiation
and return, reference copying?
To Do: test covariance calculation in notebook #2 and #5
aaronsheldon added a commit that referenced this issue Apr 24, 2020
@aaronsheldon
- decompose hazard rate into first order effect #2 and #5
cf1a547 
- expand discussion of suppression ratio and Nash equilibrium #2
- cite Google community mobility report #2
- comment demonstration module #6
aaronsheldon added a commit that referenced this issue Apr 24, 2020
@aaronsheldon
-Add comments to demonstration module and delete some functions #6
c0d4306 
-Change birth rate comments #5
-Reorganize notebook in lead up to demonstrating all functions #2
-Further work on Gompertz derivation #4
aaronsheldon added a commit that referenced this issue Apr 26, 2020
@aaronsheldon
Discussion of endogenous vs exogenous hazards #2.
0f09109 
Fix typos #4
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Expand discussion of spectral decomposition of hazard rates #2
1577fed
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Flush out resource saturation model #2
c250029
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Fix typo #2
e39e619
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
more github MathJaX failings #2
50dffe0
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
simplify MathJaX to make up for limitations of GitHub #2
aacf791
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
more GitHub MathJaX limitations #2
e95001f
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
More work on MathJaX #2
6f02e5f
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
GitHub MathJaX #2
d6301d8
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
MathJax #2
2c3c03e
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Forgot that in GitHub MathJax array environment and multicolumn matri…
6d0c9cb 
…x environments do not play nicely together #2
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Standardize variables #2
f8a9c97
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
rewording #2
c817103
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Create image of resource allocation transitions #2
cf564c7
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Another diagram flushed out. That is enough work for the day #2
e18447a
aaronsheldon added a commit that referenced this issue Apr 27, 2020
@aaronsheldon
Last typo fixes for the day #2. Moving on to admin tasks.
c186c7b
aaronsheldon added a commit that referenced this issue Apr 28, 2020
@aaronsheldon
catch mistake in exogenous resource release rate #2
c445682 
add self documenting constants to demonstration #6
aaronsheldon added a commit that referenced this issue Apr 28, 2020
@aaronsheldon
- clean up parameter table #2
5fbf230 
- add more self documenting constants to demonstration #6
aaronsheldon added a commit that referenced this issue Jun 2, 2020
@aaronsheldon
Noether currents in notebook #2
c75aef1 
Fix missing variable reference in model #6 #8
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