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Correct tiledb_query_get_range_var call #662

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Feb 22, 2024
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1 change: 1 addition & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -245,6 +245,7 @@ export(tiledb_query_get_fragment_uri)
export(tiledb_query_get_layout)
export(tiledb_query_get_range)
export(tiledb_query_get_range_num)
export(tiledb_query_get_range_var)
export(tiledb_query_import_buffer)
export(tiledb_query_result_buffer_elements)
export(tiledb_query_result_buffer_elements_vec)
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4 changes: 2 additions & 2 deletions R/Query.R
Original file line number Diff line number Diff line change
Expand Up @@ -526,12 +526,12 @@ tiledb_query_get_range <- function(query, dimidx, rngidx) {
#' Retrieve the query range for a variable-sized query dimension and range index
#'
#' @param query A TileDB Query object
#' @param dimidx An integer index selecting the dimension
#' @param dimidx An integer index selecting the variable-sized dimension
#' @param rngidx An integer index selection the given range for the dimension
#' @return An string vector with elements start and end for the query
#' range for the given dimension and range index
#' @export
tiledb_query_get_range <- function(query, dimidx, rngidx) {
tiledb_query_get_range_var <- function(query, dimidx, rngidx) {
stopifnot(`Argument 'query' must be a tiledb_query object` = is(query, "tiledb_query"),
`Argument 'dimidx' must be numeric` = is.numeric(dimidx),
`Argument 'rngidx' must be numeric` = is.numeric(rngidx))
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19 changes: 19 additions & 0 deletions inst/tinytest/test_query.R
Original file line number Diff line number Diff line change
Expand Up @@ -292,3 +292,22 @@ expect_silent(tiledb_query_set_subarray(qry, c(1L,5L), "INT32"))
expect_silent(tiledb_query_submit(qry))
expect_silent(tiledb_query_finalize(qry))
expect_equal(tiledb_query_status(qry), "COMPLETE")


uri <- tempfile()
pp <- palmerpenguins::penguins
fromDataFrame(pp, uri, sparse = TRUE, col_index = c("species", "year"))
## dim 1: species
qry <- tiledb_query(tiledb_array(uri), "READ")
expect_equal(tiledb_query_get_range_num(qry, 1), 1)
qry <- tiledb_query(tiledb_array(uri), "READ")
expect_equal(tiledb_query_get_range_var(qry, 1, 1), c("", ""))
qry <- tiledb_query(tiledb_array(uri), "READ")
expect_error(tiledb_query_get_range_var(qry, 1, 2)) # wrong range
## dim 2: year
qry <- tiledb_query(tiledb_array(uri), "READ")
expect_equal(tiledb_query_get_range_num(qry, 2), 1)
qry <- tiledb_query(tiledb_array(uri), "READ")
expect_equal(tiledb_query_get_range(qry, 2, 1), c(2007, 2009, 0))
qry <- tiledb_query(tiledb_array(uri), "READ")
expect_error(tiledb_query_get_range(qry, 2, 2)) # wrong range
1 change: 1 addition & 0 deletions man/tiledb-package.Rd

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11 changes: 2 additions & 9 deletions man/tiledb_query_get_range.Rd

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22 changes: 22 additions & 0 deletions man/tiledb_query_get_range_var.Rd

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