Use TileDB 2.18.1 (#621)

* Use TileDB 2.18.1

* Two minor tweaks to r-ci.sh, extra system logging on macOS

* Skip test_arrayschemaevolution_arrow.R on macOS

* Skip test_arrayschemaevolution.R on macOS

* Revert test skip on macOS as it really is a cpu issue

* Update NEWS.md [ci skip]

.github/r-ci.sh

@@ -17,7 +17,7 @@ set -e
 
 CRAN=${CRAN:-"https://cloud.r-project.org"}
 OS=$(uname -s)
-RVER=${RVER:-"4.3.0"}
+RVER=${RVER:-"4.3.2"}
 
 ## Optional drat repos, unset by default
 DRAT_REPOS=${DRAT_REPOS:-""}
@@ -202,7 +202,7 @@ BootstrapLinuxOptions() {
 
 BootstrapMac() {
     # Install from latest CRAN binary build for OS X
-    wget ${CRAN}/bin/macosx/big-sur-x86_64/base/R-${RVER}-x86_64.pkg  -O /tmp/R-latest.pkg
+    wget -q ${CRAN}/bin/macosx/big-sur-x86_64/base/R-${RVER}-x86_64.pkg  -O /tmp/R-latest.pkg
 
     echo "Installing OS X binary package for R"
     sudo installer -pkg /tmp/R-latest.pkg -target /
@@ -383,7 +383,9 @@ RunTests() {
     if [[ "$_R_CHECK_CRAN_INCOMING_" == "FALSE" ]]; then
         echo "(CRAN incoming checks are off)"
     fi
-    _R_CHECK_CRAN_INCOMING_=${_R_CHECK_CRAN_INCOMING_} R CMD check "${FILE}" ${R_CHECK_ARGS} ${R_CHECK_INSTALL_ARGS}
+    _R_CHECK_TESTS_NLINES_=${_R_CHECK_TESTS_NLINES_} \
+    _R_CHECK_CRAN_INCOMING_=${_R_CHECK_CRAN_INCOMING_} \
+    R CMD check "${FILE}" ${R_CHECK_ARGS} ${R_CHECK_INSTALL_ARGS}
 
     if [[ -n "${WARNINGS_ARE_ERRORS}" ]]; then
         if DumpLogsByExtension "00check.log" | grep -q WARNING; then

.github/workflows/ci.yaml

@@ -22,6 +22,10 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
+      - name: System
+        run: sysctl -a
+        if: ${{ matrix.os == 'macOS-latest' }}
+
       - name: Bootstrap
         run: ./.github/r-ci.sh bootstrap
 

NEWS.md

@@ -1,5 +1,11 @@
 # ongoing development
 
+* This release of the R package builds against [TileDB 2.18.0](https://github.com/TileDB-Inc/TileDB/releases/tag/2.18.0) and [TileDB 2.18.1](https://github.com/TileDB-Inc/TileDB/releases/tag/2.18.1), , and has also been tested against earlier releases as well as the development version (#620,#621)
+
+## Improvements
+
+* Use of TileDB Embedded was upgraded to release 2.18.0 (#620) and 2.18.1 (#621)
+
 ## Bug Fixes
 
 * When using serializing via VFS (as added in #608) the filehandles is now properly released (#619)

tools/tiledbVersion.txt

@@ -1,2 +1,2 @@
-version: 2.18.0
-sha: 71ca8b4
+version: 2.18.1
+sha: fe4544c