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LoamStream

LoamStream is a genomic analysis stack featuring a high-level language, compiler and runtime engine.

Building

Requirements

  • Git
  • Java 8
  • SBT 1.5.0+

To build a runnable LoamStream binary from the master branch:

To run the unit tests:

  • sbt test

To run the integration tests:

  • sbt it:test
  • This is best done from Jenkins, or at a minimum, from a Broad VM that can submit Uger jobs.
    • See [JENKINS.md]

Running

  • See [CLI.md] and [LOAM.md]

Packages

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Languages

  • Scala 99.7%
  • Other 0.3%