LoamStream

LoamStream is a genomic analysis stack featuring a high-level language, compiler and runtime engine.

Building

Requirements

• Git
• Java 8
• SBT 1.5.0+

To build a runnable LoamStream binary from the master branch:

• Clone the repository at https://github.com/broadinstitute/dig-loam-stream
• Build a fat jar with sbt assembly

To run the unit tests:

• sbt test

To run the integration tests:

• sbt it:test
• This is best done from Jenkins, or at a minimum, from a Broad VM that can submit Uger jobs.
  • See [JENKINS.md]

Running

• See [CLI.md] and [LOAM.md]