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Release v1.6.1#552

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ethangreen-dev merged 30 commits intomainStochSS/GillesPy2:mainfrom developStochSS/GillesPy2:developCopy head branch name to clipboardJun 29, 2021

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Commits on Jun 22, 2021

• Fix Model#get_best_solver_algo

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• Merge pull request #549 from StochSS/hotfix/solver-algo-cpp

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• Add ODE propensities to template generation

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Commits on Jun 23, 2021

• Merge pull request #550 from StochSS/hotfix/ode-cpp-propensity-template

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• Refactored the reaction __init__ function and create_mass_action function to accept str references for rates.

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Commits on Jun 24, 2021

• Merge pull request #553 from StochSS/reaction-rate-as-str

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• Added RamseyReactor robust model to test suite.

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• Added check and tests to verify behavior of SBML reactions.

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• Added SBML test file.

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• Reorganized imports, test case.

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Commits on Jun 25, 2021

• Changed name of newly added model.

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• Updated and refactored the StartHere notebook.

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• Made small tweaks to documentation stylesheets to improve readability.

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• Merge pull request #554 from StochSS/feature/robust-test-model

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• Merge pull request #559 from StochSS/feature/update-docs

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• Updated dead links.

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• Updated documentation strings to work with Sphinx doc gen.

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• Cleaned up documentation within the C++ solver (Python) codebase.

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• Updated documentation for NumPy solvers.

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• Updated documentation for solverutils.py

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Commits on Jun 28, 2021

• Merge pull request #561 from StochSS/hotfix/update-readme-links

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• Removed old advanced cells, added updated links to docs.

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• Replaced duplicate :param: with :type:.

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• Merge pull request #556 from StochSS/feature/update-starthere

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• Merge pull request #555 from StochSS/hotfix/sbml-import-err

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• Merge pull request #562 from StochSS/feature/code-docs-fix

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• Updated legacy readthedocs.io links to new domain.

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• Added license header to source files.

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Commits on Jun 29, 2021

• Merge pull request #568 from StochSS/feature/add-cr-header

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• Merge pull request #567 from StochSS/feature/update-doc-links

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