Release v1.6.1 #552
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Release v1.6.1 #552
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Reference to `can_use_cpp` on import causes `get_best_solver_algo` to fail - Replace deprecated reference to `can_use_cpp` with import of `BuildEngine` - Call to `BuildEngine#get_missing_dependencies`
Fix `Model#get_best_solver_algo`
- New flag in `Reaction#sanitized_propensity_function`: `ode` - Boolean which indicates that `ode_propensity_function` should be used - Update `get_model_defines` to populate both ODE and non-ODE propensities
Fix ODE C++ solvers for higher-order reactions
…tion to accept str references for rates.
Set reaction rate as str
+ Added SBML model asset. + Added test to suite to check for failure on invalid SBML model. + Added check that raises an exception if a reaction is missing its propensity function.
+ Added additional documentation. + Added cell to demonstrate relative (path) imports via `os`, `sys`. + Added cell to demonstrate the usage of alternate solvers. + Added cell to demonstrate plot customization. ~ Standardized formatting, usage of double quotes.
+ Added the following fonts: 'Roboto', 'Fira Code' ~ Changed default fonts -- code should be monospaced, everything else needs to be SS. ~ Tweaked font-sizes.
Added RumseyReactor robust model to test suite.
Made small tweaks to documentation stylesheets to improve readability.
Updated dead links in README.md.
Updated and refactored the StartHere notebook.
Added check and tests to verify behavior of SBML reactions.
Fixed broken documentation generation.
Added license header to source files.
Updated legacy readthedocs.io links to new documentation domain.
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GillesPy2 Release v1.6.1 Technical Changelog
Fixes
Model#get_best_solver_algocaused by usage of a deprecated function.Changes
Model.SBMLImport#__get_kinetic_lawto ensure SBML Reactions without propensity functions cannot be loaded.StartHere.ipynbexample notebook.gh-pagesbranch, updated documentation to v1.6.1