AnnotateR

Takes and annotates raw metagenome bins for input into AnnoVisR

This script requires the following programs to be in your path:

1. Prodigal
2. HMMER
3. CheckM (Optional; https://github.com/Ecogenomics/CheckM/wiki/Installation)
4. pplacer (If running CheckM; https://github.com/matsen/pplacer/releases/tag/v1.1.alpha17)

Input Requirements:

• Input files must be in fasta format and can either be genome DNA scaffolds or protein sequences
• DNA scaffold files must be named [my_genome_name].fasta
• Protein files must be named [my_proteins_name].faa